Publication

Arun, T. S., Saxena, V. K., & Vineetha, P. G. (2023). Metagenomic analysis of intestinal microbiome of Indian male line broiler reared under different management systems.

2023

Gangopadhayya, A., Lole, K., Ghuge, O., Ramdasi, A., Kamble, A., Roy, D., … & Cherian, S. S. (2023). Metagenomic Analysis of Viromes of Aedes Mosquitoes across India.

2023

Kunte, P., Barberio, M., Tiwari, P., Sukla, K., Harmon, B., Epstein, S., … & Yajnik, C. (2023). Neonatal adiposity is associated with microRNAs in adipocyte-derived extracellular vesicles in maternal and cord blood, a discovery analysis.

International Journal of Obesity, 1-11.

2023

Vishwakarma, G., Saini, A., Bhardwaj, S. C., Kumar, S., & Das, B. K. (2023). Comparative transcriptomics of stem rust resistance in wheat NILs mediated by Sr24 rust resistance gene.

Plos one, 18(12), e0295202.

2023

Singh, I., Pathak, V. K., Lavania, M., Ahuja, M., Sharma, R., Narang, T., … & Sengupta, U. (2023). Genomic characterization of Mycobacterium lepromatosis from ENL patients from India.

Infection, Genetics and Evolution, 105537.

2023

Kumari, K., Aggarwal, Y., & Singh, R. P. (2023). Molecular characterization and in-depth genomic analysis to unravel the pathogenic features of an environmental isolate Enterobacter sp. S-33.

International Microbiology, 1-16.

2023

Karyakarte, R. P., Das, R., Joshi, S., Jayaram, A., Yanamandra, S., Shende, S., … & Jadhav Sr, M. G. (2023). Genomic Characterization of an Emerging SARS-CoV-2 Variant During the Early Second Wave of the SARS-CoV-2 Pandemic in Maharashtra, India.

Cureus, 15(11).

2023

Mishra, L. K., & Shashidhar, R. (2023). Absence of Nitrogen regulatory protein C affects the growth physiology of Salmonella Typhimurium by limiting glucose transport in the cell.

Cureus, 15(11).

2023

Yadav, P., Sharma, K., Tiwari, N., Saxena, G., Asif, M. H., Singh, S., & Kumar, M. (2023). Comprehensive transcriptome analyses of Fusarium-infected root xylem tissues to decipher genes involved in chickpea wilt resistance.

3 Biotech, 13(12), 390.

2023

Kannoth, S., Ali, N., Prasanth, G. K., Arvind, K., Mohany, M., Hembrom, P. S., … & Grace, T. (2023). Transcriptome analysis of Corvus splendens reveals a repertoire of antimicrobial peptides.

Scientific Reports, 13, 18728.

2023

Bhargav, P., Chaurasia, S., Kumar, A., Srivastava, G., Pant, Y., Chanotiya, C. S., & Ghosh, S. (2023). Unraveling the terpene synthase family and characterization of BsTPS2 contributing to (S)-(+)-linalool biosynthesis in Boswellia.

Plant Molecular Biology, 1-18.

2023

Prasanna, J. A., Mandal, V. K., Kumar, D., Chakraborty, N., & Raghuram, N. (2023). Nitrate-responsive transcriptome analysis of rice RGA1 mutant reveals the role of G-protein alpha subunit in negative regulation of nitrogen-sensitivity and use efficiency.

Plant Cell Reports, 1-24.

2023

2022 Publications

2021 Publications

Payal Srivastava, Anchal Garg, Rajesh Chandra Misra, Chandan Singh Chanotiya, Sumit Ghosh, UGT86C11 is a novel plant UDP-glycosyltransferase involved in labdane diterpene biosynthesis.

Journal of Biological Chemistry, 10.1016/j.jbc.2021.101045, (101045), (2021).

2021

Journal of Biological Chemistry, 10.1016/j.jbc.2021.101045, (101045), (2021).

Frontiers in Plant Science (2020)

2021

Amit Raychoudhuri, Anjani Kumari Naru, Sitarami Reddy Kanubothula, Ravali Uddala, Development of an experimental inactivated vaccine from Vero cell adapted Enterovirus D68,Virus Research(304)2021,

virusres.2021.198528.

2021

Yadav, E.J., Prabhakar, Y.K., Sreenath, K. et al. Molecular investigation and phylogenetic analysis of Jaagsiekte sheep retrovirus in naturally ovine pulmonary adenocarcinoma infected small ruminants in Andhra Pradesh, India.

Comp Clin Pathol (2021).

2021

S. DIXIT et al., Evaluation of Community Structures and their Physicochemical Correlation with Five Hot Springs in India.

Geomicrobiology Journal (2021).

2021

Shaikh, A., Sriraman, K., Vaswani, S. et al. Early phase of effective treatment induces distinct transcriptional changes in Mycobacterium tuberculosis expelled by pulmonary tuberculosis patients.

Sci Rep 11, 17812 (2021).

2021

2020 Publications

2019 Publications

Alterations of salivary microbial community associated with oropharyngeal and hypopharyngeal squamous cell carcinoma patients.

Panda M, Rai Ak et al., 2019

2019

High-throughput metabolomic and transcriptomic analyses vet the potential route of cerpegin biosynthesis in two varieties of Ceropegia bulbosa Roxb Sachin A.

Gharat, Balkrishna A. Shinde et al.,

2019

Identification of Novel microRNAs and their targets in chlorophytum borivilianum by small RNA and degradome sequencing.

Monika K, Nishant K et al.,KeAI 2019

2019

Identification if miRNA targets by AtFT overexpression in Tobacco

2019

Overexpression of native Musa-miR397 enhances plant biomass without compromising abiotic stress tolerance in banana.

Prashanti P, Karuna Y, Scientific Reports (2019), Volume 9.

2019

First Draft Genome Sequence of Wheat Spot Blotch Pathogen Bipolaris sorokiniana BS_112 from India, Obtained Using Hybrid Assembly Rashmi Aggarwal,Sapna Sharma American Society for Microbiology

2019

Asparagus racemosus bZIP transcription factor-regulated squalene epoxidase (ArSQE) promotes germination and abiotic stress tolerance in transgenic tobacco Swati Upadhyay, Gajendra Singh Jeena Science Direct

2019

Himanshu Sharma and B. Anand, Ribosome assembly defects subvert initiation Factor3 mediated scrutiny of bona fide start signal, Nucleic acids Research

2019

Celecoxib potentiates antibiotic uptake by altering membrane potential and permeability in Staphylococcus aureus Gajapati Y. N. Varma. Githavani Kummari

2019

Analysis of molecular switch between leukocyte and substrate adhesion in bone marrow endothelial cells Swati Gupta, Gurudutta Gangenahalli

2019

Transcriptomic analysis of a Sorghum bicolor landrace identifies a role for beta-alanine betaine biosynthesis in drought tolerance N. Devnaraina,B.G. Crampton

2019

The sensor kinase MtrB of Mycobacterium tuberculosis regulates hypoxic survival and establishment of infection Srijon KB, Suruchi L

2019

Diana Pradhan, Vidya Devi Negii et al., Repeated in-vitro and in-vivo exposure leads to genetic alteration, adaptations, and hypervirulence in Salmonella, 2019

2019

Genetic diversity and population structure of the threatened chocolate mahseer (Neolissochilus hexagonolepis McClelland 1839) based on SSR markers: implications for conservation management in Northeast India

2019

Functional annotation of differentially expressed genes under salt stress in Dichanthium annulatum Anita Mann,

Naresh Kumar et al., Ind J Plant Physiol., 2018

2019

Vijayakumar M. Malathi, Ravi P. More, et al., Gut Bacterial Diversity of Insecticide-Susceptible and -Resistant Nymphs of the Brown Planthopper Nilaparvata lugens Stål (Hemiptera: Delphacidae) and Elucidation of Their Putative Functional Roles Journal of microbial Biotechnology, 2018

2019

Curcumin induced oxidative stress causes autophagy and apoptosis in bovine leucocytes transformed by Theileria annulata Prasanna Babu Araveti & Anand Srivastava

2019

A prospective radomized,double-blind,placebo-controlled,dose-response relationship study to investigate efficacy of fructo-oligosaccharides on human gut microflora

2019

miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes

2019

De novo assembly of the Indian blue peacock(Pavo Cristatus) genome using Oxford Nanopore Technology and Illumina Sequencing

2019

Thiagarajan Y, Ashok kumar R, Sivakumaran T.S, Comparative study on Performance of graphite and Carbon Nano Tubes (CNT) coated SSM electrodes in cow dung slurry-fed Microbial fuel cell.

2019

KMT1 family methyltransferases regulate heterochromatin–nuclear periphery tethering via histone and non-histone protein methylation Publication: EMBO Reports (2019) Authors: Radhika Arasala Rao , Alhad Ashok Ketkar, Neelam Kedia, Vignesh K Krishnamoorthy, Vairavan Lakshmanan, Pankaj Kumar , Abhishek Mohanty , Shilpa Dilip Kumar , Sufi O Raja , Akash Gulyani , Chandra Prakash Chaturvedi , Marjorie Brand ,Dasaradhi Palakodeti & Shravanti Rampalli February 12, 2019

2019

Transcriptome profiling reveals genetic basis of disease resistance against Corynespora cassiicola in rubber tree (Hevea brasiliensis) Publication: Current Plant Biology Publisher: Elsevier.

February 24, 2019

2019

Circular RNA Profiling by Illumina Sequencing via Template-Dependent Multiple Displacement Amplification Authors: Ashirbad Guria,Kavitha Velayudha Vimala Kumar,1 Nagesh Srikakulam, Anakha Krishnamma,Saibal Chanda, Satyam Sharma,Xiaofeng Fan, and Gopal Pandi, Journal: BioMed Research International Volume 2019, Article ID 2756516, 12 pages January 28, 2019

2019

Next-Generation Sequencing Reveals the Role of Epigallocatechin-3-Gallate in Regulating Putative Novel and Known microRNAs Which Target the MAPK Pathway in Non-Small-Cell Lung Cancer A549 Cells Authors: Vaishali Bhardwaj and Abul Kalam Azad Mandal Journal: Molecules 2019

2019

Genome‐wide analysis reveals miR‐3184‐5p and miR‐181c‐3p as a critical regulator for adipocytes‐associated breast cancer Authors: Dheeran Rajarajan Sweetha Selvarajan Mamilla R.

Charan Raja Santanu Kar Mahapatra Ravi Kasiappan January 17, 2019 Publication: PNAS

2019

A SIR-independent role for cohesin in subtelomeric silencing and organization Authors: Deepash Kothiwala and Shikha Lalorayaa Publication:

PNAS, January 17, 2019

2019

Identification and expression profiling of miRNAs in two color variants of carrot (Daucus carota L.) using deep sequencing Authors:Bhavana Bhan, Archana Koul, Deepak Sharma, Malik Muzafar Manzoor, Sanjana Kaul, Suphla Gupta, Manoj K.

Dhar
Publication: Plos One
March 7, 2019

2019

Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane Authors: Dyfed Lloyd Evans, Shailesh V. Joshi and Jianping Wang Journal:

BMC Evolutionary Biology2019 19:33

2019

2018 Publications

Prophage-Driven Genomic Structural Changes Promote Bartonella Vertical Evolution Ricardo G., Barak M., et al., Genome Biology and Evolution, Volume 10, Issue 11, November 2018, Pages 3089–3103

2018

Identification and characterization of miRNA transcriptome in Jatropha curcas by high-throughput sequencing VN Prakash, VJ Jadeja Plant gene, 2018 – Elsevier

2018

Evidence for up and down regulation of 450 genes by rpoB12 (rif) mutation and their implications in complexity of transcription modulation in Escherichia coliS Meenakshi, MH Munavar Microbiological research, 2018 – Elsevier

2018

A Splicing-Independent Function of RBM10 Controls Specific 3′ UTR Processing to Regulate Cardiac Hypertrophy, Cell Reports, Volume 24, Issue 13, September 2018, Pages 3539-3553 Nimmy Mohan, Vikas Kumar, Divya T.

Kandala, Chandrasekharan C. Kartha, Rakesh S. Laishram,

2018

Ahmed A, Adiga V, Nayak S, Uday Kumar JAJ, Dhar C, et al. (2018) Circulating HLA-DR+CD4+ effector memory T cells resistant to CCR5 and PD-L1 mediated suppression compromise regulatory T cell function in tuberculosis.

PLOS Pathogens 14(9):e1007289. https://doi.org/10.1371/journal.ppat.1007289

2018

Anand, Atul, Jayaramaiah, Ramesha H., Beedkar, Supriya D., Dholakia, Bhushan B., Lavhale, Santosh G., Punekar, Sachin A., Gade, Wasudeo N., Thulasiram, Hirekodathakallu V., Giri, Ashok P. Terpene profiling, transcriptome analysis and characterization of cis-β-terpineol synthase from Ocimum. Physiology and Molecular Biology of Plants. 0974-0430.

October 2018. https://doi.org/10.1007/s12298-018-0612-6

2018

Shantanu Kundu, Vikas Kumar, Kaomud Tyagi, Rajasree Chakraborty, Iftikar Rahaman, Kailash Chandra. Complete mitochondrial genome of Indian tent turtle,Pangshura tentoria and comparative mitochondriomics. PeerJ Preprints.

September 2018. https://doi.org/10.7287/peerj.preprints.27202v1

2018

Mondal, Tapan Kumar, Rawal, Hukam Chand, Chowrasia, Soni, Varshney, Deepti, Panda, Alok Kumar, Mazumdar, Abhishek, Kaur, Harmeet, Gaikwad, Kishor, Sharma, Tilak Raj, Singh, Nagendra Kumar. September 2018. Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes.

Scientific Reports. 13698 VL. 2045-2322. https://doi.org/10.1038/s41598-018-31518-y

2018

Ondara Zablon Kerima, Pathappa Niranjana, Vinay Kumar B.S., Rajeshwari Ramachandrappa, Sharanappa Puttappa, Yadavalli Lalitha, Sushil K.Jalali, Chandish R.Ballal, Hirekodathakallu V.Thulasiram. De novo transcriptome analysis of the egg parasitoid Trichogramma chilonis Ishii (Hymenoptera: Trichogrammatidae): A biological control agent.

Gene Reports. Volume 13, December 2018, Pages 115-129

2018

Sowmya Handenahally Reddy Sumanth Kumar Kambalimath Rajesh Kumar Singhal Manjunath K Chikkakariyappa Raveendran Muthurajan Mavinahalli P Rajanna Rohini Sreevathsa Amitha Mithra Sevanthi Trilochan Mohapatra Sarala Neelamraju Viswanathan Chinnuswamy S Gopal Krishnan Ashok K Singh Nagendra K Singh Rameshwar P Sharma Sreeman M Sheshshayee. Allele specific analysis of single parent backcross population identifies HOX10 transcription factor as a candidate gene regulating rice root growth.

03 September 2018. https://doi.org/10.1111/ppl.12826

2018

Nair, Raji R. Madiwale, Shreyas V. Saini, Deepak Kumar, August 2018. Clampdown of inflammation in aging and anticancer therapies by limiting upregulation and activation of GPCR, CXCR4.

npj Aging and Mechanisms of Disease. 2056-3973. https://doi.org/10.1038/s41514-018-0028-0

2018

Manoharan Shankar, Anbazhagan Mageswari, Chandrasekaran Suganthi, Paramasamy Gunasekaran, Kodiveri M. Gothandam, Sivashanmugam Karthikeyan. Genome Sequence of a Moderately Halophilic Bacillus cereus Strain, TS2, Isolated from Saltern Sediments.

Microbiol Res Announc Aug 2018, 7 (6) e00873-18; DOI: 10.1128/MRA.00873-18

2018

Vishal Singh Somvanshi, Madhura Tathode, Rohit Nandan Shukla, Uma Rao, Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, Meloidogyne graminicola.

Journal of Nematology. VOLUME 50 , ISSUE 2 , ISSN (Online) , DOI: 10.21307/jofnem-2018-018, September 2018. The Society of Nematologists

2018

Asmaa Missoum, DNA Microarray and Bioinformatics Technologies: A mini-review, Proceedings of the Nature Research Society, 2, 02010 (2018).

doi: 10.11605/j.pnrs.201802010

2018

Sundaresan, Srivignesh, Philosoph Hadas, Sonia Ma, Chao – Jiang, Cai-Zhong, Riov, Joseph, Mugasimangalam, Raja, Kochanek, Betina, Salim, Shoshana, Reid, Michael S., Meir, Shimon, The Tomato Hybrid Proline-rich Protein regulates the abscission zone competence to respond to ethylene signals, Horticulture Research 2018, Volume 5, Issue 1, Pages 2052-7276

2018

Ramasamy Yasodha, Ramesh Vasudeva, Swathi Balakrishnan, Ambothi Rathnasamy Sakthi, Nicodemus Abel, Nagarajan Binai, Balaji Rajashekar, Vijay Kumar Waman Bachpai, Chandrasekhara Pillai, Suma Arun Dev; Draft genome of a high value tropical timber tree, Teak (Tectona grandis L. f): insights into SSR diversity, phylogeny and conservation, May 2018, DNA Research

2018

Chandreyee Datta Arijita Subuddhi Manish Kumar Thurbu Tshering Lepcha Sohini Chakraborty Kuladip Jana Zhumur Ghosh Asish Kumar Mukhopadhyay Joyoti Basu Manikuntala Kundu, Genome‐wide mRNA–miRNA profiling uncovers a role of the microRNA miR‐29b‐1‐5p/PHLPP1 signalling pathway in Helicobacter pylori‐driven matrix metalloproteinase production in gastric epithelial cells,

Cellular Microbiology, May 2018

2018

Mohammad Rumman, Abhijit Majumder, Linda Harkness, Balu Venugopal, M.B. Vinay, Malini S. Pillai, Moustapha Kassem, Jyotsna Dhawan, Induction of quiescence (G0) in bone marrow stromal stem cells enhances their stem cell characteristics, Stem Cell Research,

Volume 30, 2018, Pages 69-80, ISSN 1873-5061

2018

2017 Publications

Sanjeev Kumar Shukla, Shubhra Shukla, Rehan Khan, Anuj Ahuja, Lakshya Veer Singh, Nitin M. Kamble, Anupam Dhasmana, Naveen Sharma, Bipin Chand, Ajay Vir Singh. Pathway analysis of differentially expressed genes in Mycobacterium bovis challenged bovine macrophages (2017)

olume 114, Page 1235, 10.1038/bjc.2016.91

2017

Ella, Krishna Murthy Kandaswamy, Sumathy Inactivated chikungunya viruses (CHIKV) comprising an E1-K211E mutation.

FPO (2017)

2017

K. Polavarapu, , A. Nalini, S. MK, S. Narayan Rao, V. Preethish-Kumar, D. Sekar, V. Sundar, S. Vengalil, S. Nashi, V. Krishnamurthy. A next generation sequencing based mutational analysis in Duchenne and Becker muscular dystrophy.

Journal of the Neurological Sciences (2017).

2017

Jyoti Kureel, Aijaz A. John, Ravi Prakash, Divya Singh. MiR 376c inhibits osteoblastogenesis by targeting Wnt3 and ARF-GEF-1 -facilitated augmentation of beta-catenin transactivation.

Journal of Cellular Biochemistry (2017).

2017

Soumyadev Sarkar, Somnath Chakravorty, Avishek Mukherjee, Debanjana Bhattacharya, Semantee Bhattacharya, Ratan Gachhu. De novo RNA-Seq based transcriptome analysis of Papiliotrema laurentii strain RY1 under nitrogen starvation.

Gene (2017).

2017

Rathinasamy Karpagam, Kalimuthu Jawaharraja, Balasubramaniem Ashokkumar, Jayavel Sridhar, Perumal Varalakshmi, Unraveling the lipid and pigment biosynthesis in Coelastrella sp. M-60: Genomics-enabled transcript profiling.

Algal Research (2018).

2017

G Kiran Kumar Reddy, Y V Nancharaiah. Sustainable bioreduction of toxic levels of chromate in a denitrifying granular sludge reactor.

Environmental Science and Pollution Research (2017).

2017

P.A. Sutton, P.V. Jithesh1, R.P. Jones, J.P. Evans, D. Vimalachandran, H.Z. Malik, B.K. Park, C.E. Goldring, D.H. Palmer, N.R. Kitteringham. Exome sequencing of synchronously resected primary colorectal tumours and colorectal liver metastases to inform oncosurgical management.

The Journal of Cancer Surgery (2017).

2017

Poulomi Banerjee, Harshini Surendran, Kapil Bharti, Kaoru Morishita, Anurag Varshney, Rajarshi Pal. Long non-coding RNA RP11-380D23.2 drives distal-proximal patterning of the lung by regulating PITX2 expression.

Stem Cells (2017).

2017

Deepika Singh, Debajyoti Kabiraj, Pragya Sharma, Hasnahana Chetia, Ponnala Vimal Mosahari, Kartik Neog, Utpal Bora. The mitochondrial genome of Muga silkworm (Antheraea assamensis) and its comparative analysis with other lepidopteran insects.

PLoS ONE (2017).

2017

Dillon F. Da Fonte, Christopher J. Martyniuk, Lei Xing, Adrian Pelin, Nicolas Corradi, Wei Hu & Vance L. Trudeau. Secretoneurin A regulates neurogenic and inflammatory transcriptional networks in goldfish (Carassius auratus) radial glia.

Nature’s Scientific Reports (2017).

2017

Jyoti Kode, Navin Khattry, Ashish Bakshi, Vasanti Amrutkar, Bhausaheb Bagal, Rohini Karandikar, Pallavi Rane, Nobutaka Fujii, Shubhada Chiplunkar. Study of stem cell homing & self-renewal marker gene profile of ex vivo expanded human CD34+ cells manipulated with a mixture of cytokines & stromal cell-derived factor 1.

Indian Journal of Medical Research (2017).

2017

Tarique Anwar, Bijoya Sen, Savera Aggarwal, Rhisita Nath, Ajay Katoch, Mohamed Aiyaz, Nirupma Trehanpati, Sanjeev Khosla, Gayatri Ramakrishnan. Differentially regulated gene expression in quiescence vs. senescence and identification of ARID5A as a quiescence associated marker.

Journal of Cellular physiology (2017).

2017

Rama Chandra Laha, Surajit De Mandal, Lalhmanghai Ralte, Laldinfeli Ralte, Nachimuthu Senthil Kumar, Guruswami Gurusubramanian, Ramalingam Satishkumar, Raja Mugasimangalam and Nagesh Aswathnarayana Kuravadi. Correction to: Meta-barcoding in combination with palynological inference is a potent diagnostic marker for honey floral composition.

AMB Express (2017)

2017

Susheel Kumar Singh, Sunita Singh Dhawan. Analyzing trichomes and spatio-temporal expression of a cysteine protease gene Mucunain in Mucuna pruriens L.

(DC). Protoplasma (2017).

2017

Kuppusamy Sivasankaran, Pratheesh Mathew, Sekar Anand, Stanislaus Antony Ceasar, Soosaimanikam Mariapackiam, Savarimuthu Ignacimuthu. Complete mitochondrial genome sequence of fruit-piercing moth Eudocima phalonia (Linnaeus, 1763) (Lepidoptera: Noctuoidea).

Genomics Data (2017).

2017

Tapan Kumar Mondal, Hukam Chand Rawal, Kishor Gaikwad, Tilak Raj Sharma, Nagendra Kumar Singh. First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza.

2017

Udita Chandra, Aarti Yadav, Devanand Kumar, Swati Saha. Cell cycle stage-specific transcriptional activation of cyclins mediated by HAT2- dependant H4K10 acetylation of promoters in Leishmania donovani.

PLoS Pathog (2017).

2017

Gursharan Kaur, Vineet Kumar, Amit Arora, Ajay Tomar, Ashish, Runa Sur & Dipak Dutta. Affected energy metabolism under manganese stress governs cellular toxicity.

Natures Scientific Reports (2017).

2017

Surender Kumar, BL Subbarao & Vipin Hallan. Molecular characterization of emaraviruses associated with Pigeonpea sterility mosaic disease.

Natures Scientific Reports (2017).

2017

Nizar Haddad, Noureddine Adjlane, Wahida Loucif-Ayad, Abhinandita Dash, S. Naganeeswaran, Balaji Rajashekar, Kosai Ali Ahmed Al-Nakeeb, Thomas Sicheritz-Pontén. Mitochondrial genome of the North African Sahara Honeybee, Apis mellifera sahariensis (Hymenoptera: Apidae).

Mitochondrial Dna Part B (2017).

2017

Sumit Kumar, Rachapudi Venkata Sreeharsha, Shalini Mudalkar, Prasad M. Sarashetti & Attipalli Ramachandra Reddy. Molecular insights into photosynthesis and carbohydrate metabolism in Jatropha curcas grown under elevated CO2 using transcriptome sequencing and assembly.

Natures Scientific Reports (2017).

2017

2016 Publications

2016

Hickman, Oliver J, Smith, Richard A, Dasgupta, Prokar, Rao, Sudha Narayana, Nayak, Soumya, Sreenivasan, Shubha, Vyakarnam, Annapurna, Galustian, Christine, Expression of two WFDC1/ps20 isoforms in prostate stromal cells induces paracrine apoptosis through regulation of PTGS2/COX-2, British Journal Of Cancer, Volume 114, Page 1235, 10.1038/bjc.2016.91

Volume 114, Page 1235, 10.1038/bjc.2016.91

2016

Choubey, A. & Rajam, M.V. (2016) Transcriptome response and developmental implications of RNAi-mediated ODC knockdown in tobacco.

Funct Integr Genomics. pp 1-14.

2016

Tellapragada C, Kamthan A, Shaw T, KEV, KumarS, Bhat V, et al. (2016) Unravelling the Molecular Epidemiology and Genetic Diversity among Burkholderia pseudomallei Isolates from South India Using Multi Locus Sequence Typing. PLoS ONE 11(12):e0168331.doi:10.1371/journal.pone.0168331

PLoS ONE 11(12):e0168331.doi:10.1371/journal.pone.0168331

2016

Pandey SS, Patnana PK, Lomada SK, Tomar A, Chatterjee S (2016) Co-regulation of Iron Metabolism and Virulence Associated Functions by Iron and XibR, a Novel Iron Binding Transcription Factor, in the Plant Pathogen Xanthomonas.

PLoS Pathog 12(11): e1006019. doi:10.1371 /journal. ppat.1006019.

2015

Jees Sebastian, Sharmada Swaminath, Rashmi Ravindran Nair, Kishor Jakkala, Atul Pradhan and Parthasarathi Ajitkumar. (2016) De Novo Emergence of Genetically Resistant Mutants of Mycobacterium tuberculosis from the Persistence Phase Cells formed against Antituberculosis Drugs In Vitro.

Antimicrob. Agents Chemother. AAC.01343-16.

2016

Megha H. Sampangi-Ramaiah, Kundapura V. Ravishankar, Ajitha Rekha, Kodathalu Seetharamaiah Shivashankara, laxman R. Hunashikatti. A Contig-Based Computational Prediction of Conserved miRNAs and Their Probable Role in Regulation of Cuticular Wax Biosynthesis in Banana.

Plant Mol Biol Rep (2016)

2016

Deepak Kumar, Saptarshi Hazra, Riddhi Datta & Sharmila Chattopadhyay. Transcriptome analysis of Arabidopsis mutants suggests a crosstalk between ABA, ethylene and GSH against combined cold and osmotic stress.

Scientific Reports 6, Article number: 36867; (2016).

2016

Das P, Bansal A, Rao SN, Deodhar K, Mahantshetty U, Shrivastava SK, et al. (2016) Somatic Variations in Cervical Cancers in Indian Patients.

PLoS ONE 11(11):e0165878.

2016

Muthuswamy M, Uma S, Backiyarani S, Saraswathi MS and Chandrasekar A. Transcriptomic Changes of Drought-Tolerant and Sensitive Banana Cultivars Exposed to Drought Stress.

Front. Plant Sci (2016). 7:1609

2016

Rohini Bhat Valekunja, Vikramshankar Kamakoti, Anitha Peter, Shamprasad Phadnis, Shalini Prasad and Vinay J Nagaraj. The Detection of Papaya Ringspot Virus Coat Protein Using an Electrochemical Immunosensor.

Analytical Methods (2016).

2016

Jayaraman Suriya,Mootapally Chandra Shekar, Neelam Mustakali Nathani,Thangaiyan Suganya,Subramanian Bharathiraja,Muthukalingan Krishnan. Assessment of bacterial community composition in response to uranium levels in sediment samples of sacred Cauvery River.

Applied Microbiology and Biotechnology (2016).

2016

Anirban Kundu, Sujay Paul, Amita Pal and Genotypic Technology. Mungbean Yellow Mosaic India Virus (MYMIV)-infection, Small RNA Library Construction and Deep Sequencing for MicroRNA Identification in Vigna mungo.

bio-protocol (2016).

2016

Vandana Sharma, Rajaram Purushotham and Rupinder Kaur. The phosphoinositide 3-kinase regulates retrograde trafficking of the iron permease CgFtr1 and iron homeostasis in Candida glabrata.

The Journal of Biological Chemistry (2016)

2016

Ruchishree Konhar, Devendra Kumar Biswal, Manish Debnath, Sriram Parameswaran, Durai Sundar, Pramod Tandon. Complete Chloroplast Genome Sequence of Dendrobium nobile from Northeastern India. American Society for Microbiology.

Genome Announcements; vol 4 (5) (2016).

2016

Akansha Pandey, Vishakha Swarnkar, Tushar Pandey, Piush Srivastava, Sanjeev Kanojiya, Dipak Kumar Mishra & Vineeta Tripathi. Transcriptome and Metabolite analysis reveal candidate genes of the cardiac glycoside biosynthetic pathway from Calotropis procera.

NATURE Scientific Reports 6, Article number: 34464 (2016)

2016

Pon Arunachalam Boopathi, Amit Kumar Subudhi, Sheetal Middha, Jyoti Acharya, Raja Chinnadurai Mugasimangalam, Sanjay Kumar Kochar, Dhanpat Kumar Kochar, Ashis Das. Design, Construction and Validation of a Plasmodium vivax microarray for the transcriptome profiling of clinical isolates.

Acta Tropica (2016)

2016

Srilatha Jasty, Subramanian Krishnakumar. Profiling of DNA and histone methylation reveals epigenetic-based regulation of gene expression during retinal differentiation of Stem/progenitor cells isolated from the ciliary pigment epithelium of Human cadaveric eyes.

Brain Research (2016)

2016

Anirban Roychowdhury, Sudip Samadder, Pijush Das, Sapan Mandloi, Sankar Addya, Chandraditya Chakraborty, Partha Sarathi Basu, Ranajit Mondal, Anup Roy, Saikat Chakrabarti, Susanta Roychoudhury, Chinmay Kumar Panda. Integrative genomic and network analysis identified novel genes associated with the development of advanced cervical squamous cell carcinoma.

Biochimica et Biophysica Acta (BBA) – General Subjects (2016).

2016

Devika Ranade, Shivsmriti Koul, Joyce Thompson, Kumar Brajesh Prasad, Kundan Sengupta. Chromosomal aneuploidies induced upon Lamin B2 depletion are mislocalized in the interphase nucleus.

Chromosoma (2016).DOI 10.1007/s00412-016-0580-y

2016

Kaliyappan R, Viswanathan S, Suthanthiram B, Subbaraya U, Marimuthu Somasundram S, et al. (2016) Evolutionary Expansion of WRKY Gene Family in Banana and Its Expression Profile during the Infection of Root Lesion Nematode, Pratylenchus coffeae.

PLoS ONE 11(9): e0162013. doi:10.1371/journal.pone.0162013

2016

Atish Ray, Asani Bhaduri, Nidhi Srivastava, Shibnath Mazumder. Identification of novel signature genes attesting arsenic-induced immune alterations in adult zebrafish (Danio rerio).

Journal of Hazardous Materials(2017);Volume 321, Pages 121–131

2016

Ganesan S, Alex AA, Chendamarai E, Balasundaram N, Palani HK, David S, Kulkarni U, Aiyaz M, Mugasimangalam R, Korula A, Abraham A, Srivastava A, Padua RA, Chomienne C, George B, Balasubramanian P, Mathews V. Rationale and efficacy of proteasome inhibitor combined with arsenic trioxide in the treatment of acute promyelocytic

leukemia. Leukemia. 2016 Aug, Vol 18. doi: 10.1038/leu.2016.227.

2016

Snehal D. Karpe, Rikesh Jain, Axel Brockmann and R. Sowdhamini.Identification of complete repertoire of Apis florea odorant receptors reveals complex orthologous relationships with Apis mellifera.

Genome Biology and Evolution,2016;doi:10.1093/gbe/evw202

2016

Haoxin Li, Andrew Cowie, John A. Johnson, Duncan Webster, Christopher J. Martyniuk and Christopher A. Gray. Determining the mode of action of anti-mycobacterial C17 diyne natural products using expression profiling: evidence for fatty acid biosynthesis inhibition.

BMC Genomics (2016) 17:621. DOI 10.1186/s12864-016-2949-y

2016

Sujay Paul, Yolanda Cortez,Nadia Vera,Gretty K. Villena and Marcel Gutiérrez-Correa.

BBJ, 15(1): 1-11, 2016; Article no.BBJ.27519

2016

Pallavi Kakade, Parag Sadhale, Kaustuv Sanyal & Valakunja Nagaraja. ZCF32, a fungus specific Zn(II)2 Cys6 transcription factor, is a repressor of the biofilm development in the human pathogen Candida albicans.

Scientific Reports 6, Article number: 31124 (2016) doi:10.1038/srep31124.

2016

Cornelia Braicu, Sonia Selicean, Roxana Cojocneanu-Petric, Raduly Lajos, Ovidiu Balacescu, Ionelia Taranu, Daniela Eliza Marin, Monica Motiu, Ancuta Jurj, Patriciu Achimas-Cadariu and Ioana Berindan-Neagoe.Evaluation of cellular and molecular impact of zearalenone and Escherichia coli co-exposure on IPEC-1 cells using microarray technology.

BMC Genomics (2016);17:576. DOI: 10.1186/s12864-016-2830-z

2016

Josephy D. DiBattista, Xin Wang, Pablo Saenz-Agudelo, Marek J. Piatek, Manuel Aranda, Michael L Berumen.Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics.

Molecular Ecology Resources (2016); DOI: 10.1111/1755-0998.12588

2016

Ashok Ganapathy, Sridhar Jayavel and Sivakumar Natesan. Draft Genome Sequence of Carotenoid Producing Yellow Pigmented Planococcus maritimus MKU009.

Journal of Genomics 2016, Vol. 4: 23-25. doi: 10.7150/jgen.15533

2016

Vairavan Lakshmanan, Dhiru Bansal, Jahnavi Kulkarni, Deepak Poduval, Srikar Krishna, Vidyanand Sasidharan, Praveen Anand, Aswin Seshasayee and Dasaradhi Palakodeti. Genome-wide analysis of polyadenylation events in Schmidtea mediterranea.

G3: Genes|Genomes|Genetics (2016)doi:10.1534/g3.116.031120

2016

Alok Kumar Singh, Rajeev Kumar Pandey, Chandrima Shaha & Rentala Madhubala. MicroRNA expression profiling of Leishmania donovani-infected host cells uncovers the regulatory role of MIR30A-3p in host autophagy.

Autophagy (2016)

2016

Amit Kumar Subudhi, P.A. Boopathi, Sheetal Middha, Jyoti Acharya, Sudha Narayana Rao, Raja C. Mugasimangalam, Paramendra Sirohi, Sanjay K. Kochar, Dhanpat K. Kochar, Ashis Das. A cross strain Plasmodium falciparum microarray optimized for the transcriptome analysis of Plasmodium falciparum patient derived isolates.

Genomics Data (2016); Vol 9, Pg 118–125

2016

Chakrapani, V., Patra, S.K., Mohapatra, S.D. et al. Comparative transcriptomic profiling of larvae and post-larvae of Macrobrachium rosenbergii in response to metamorphosis and salinity exposure.

Genes Genom (2016). doi:10.1007/s13258-016-0452-0

2016

Moiz A. Ansari1, Zeeshan Fatima1, Saif Hameed. Mechanistic insights into the mode of action of anticandidal sesamol.

Microbial Pathogenesis (2016); vol 98, Pg 140-148

2016

Sujay Paul, Yolanda Cortez, Nadia Vera, Gretty K. Villena, Marcel Gutiérrez-Correa. Metagenomic analysis of microbial community of an Amazonian geothermal spring in Peru.

Genomics Data (2016); Vol 9, pg 63-66

2016

Jatoth Balsingh, Surabhi Radhakrishna, Kandasamy Ulaganathan.Draft Genome Sequence of Bacillus pumilus ku-bf1 Isolated from the Gut Contents of Wood Boring Mesomorphus sp.

Front. Microbiol,2016 June, doi:10.3389/fmicb.2016.01037

2016

Shilpa Sharma, Gurudutta Gangenahalli. Gene Expression Profiling of Human c-Kit Mutant D816V.

Journal of Cancer Therapy, 2016 June,Vol 7,Pg 439-454

2016

Mahendra Gaur, Aradhana Das, Rajesh Kumar Sahoo, Sujata Mohanty, Raj Kumar Joshi, Enketeswara Subudhi. Comparative transcriptome analysis of ginger variety Suprabha from two different agro-climatic zones of Odisha.

Genomics Data, 2016 September, Vol 9, Pages 42–43

2016

Mahendra Gaur,Aradhana Das,Rajesh Kumar Sahoo,Basudeba Kar,Sanghamitra Nayak,Enketeswara Subudhi.De Novo transcriptome assembly of Zingiber officinale cv. Suruchi of Odisha.

Genomics Data, 2016 September,Vol 9,Pages 87–88

2016

Naveen Prasad, Shreeharsha Tarikere, Dhanashree Khanale, Farhat Habib, LS Shashidhara.A comparative genomic analysis of targets of Hox protein Ultrabithorax amongst
distant insect species.

Scientific Reports, 2016, vol 6, Article number: 27885.doi:10.1038/srep27885

2016

Nilakshi Samaranayake, Sumadhya D. FernandoEmail author, Nilaksha F. Neththikumara, Chaturaka Rodrigo, Nadira D. Karunaweera and Vajira H. W. Dissanayake.Association of HLA class I and II genes with cutaneous leishmaniasis: a case control study from Sri Lanka and a systematic review.

BMC Infectious Diseases, (2016) 16:292.DOI 10.1186/s12879-016-
1626-8

2016

Aarti Yadav, Udita Chandra & Swati Saha. Histone acetyltransferase HAT4 modulates navigation across G2/M and re-entry into G1 in Leishmania donovani.

Nature Publishing Group. Scientific Reports, 2016 June, Vol 6

2016

S. Dharshinia, M. Chakravarthia, J.Ashwin Narayana, V.M. Manoj, M. Naveenarani, Ravinder Kumar, Minturam Meena, Bakshi Ram, C. Appunu. De novo sequencing and transcriptome analysis of a low temperature tolerant Saccharum spontaneum clone IND 00-1037.

Journal of Biotechnology, 2016 August, Vol 231,Pg 280–294.

2016

Anirvan Chatterjee, Farhan Ali, Disha Bange, Kiran Kondabagil. solation and complete genome sequencing of Mimivirus bombay, a Giant Virus in sewage of Mumbai, India.

Genomics Data, 2016 September, Vol 9,Pg 1–3

2016

Aleksei Krasnov, Hooman Moghadam, Thomas Larsson, Sergey Afanasyev, Turid Mørkøre. Gene expression profiling in melanised sites of Atlantic salmon fillets.

Fish & Shellfish Immunology, 2016 August, Vol 55, Pg 56-63

2016

Satendra Kumar Mangrauthia, Surekha Agarwal, B. Sailaja, N. Sarla, S. R. Voleti. Transcriptome Analysis of Oryza sativa (Rice) Seed Germination at High Temperature Shows Dynamics of Genome Expression Associated with Hormones Signalling and Abiotic Stress Pathways.

Tropical Plant Biol. (2016). doi:10.1007/s12042-016-9170-7

2016

Kushal N. Gohil, Priya S. Neurgaonkar , Aditi Paranjpe , Syed G. Dastager, Mahesh S. Dharne. Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions.

Elsevier, 2016 August, Vol 8, Pg. 72-76

2016

Kamaldeen Nasrin Nisha, Jayavel Sridhar, Perumal Varalakshmi and Balasubramaniem Ashokkumar Draft Genome Sequence of Paracoccus sp. MKU1, a New Bacterial Strain Isolated from an Industrial Effluent with Potential for Bioremediation.

Journal of Genomics 2016, Vol. 4:13-15. doi: 10.7150/jgen.14847

2016

Rathan S. Jadav, Dharmika Kumara, Natasha Buwa, Shubhra Gangulia, Sitalakshmi R. Thampattya, Nagaraj Balasubramanian, Rashna Bhandaria. Deletion of inositol hexakisphosphate kinase 1 (IP6K1) reduces cell migration and invasion, conferring protection from aerodigestive tract
carcinoma in mice.

Elsevier, 2016 August, Vol 28(8), Pg 1124–1136

2016

Garima Sharma, Divya Tej Sowpati, Prakruti Singh, Mehak Zahoor Khan, Rakesh Ganji, Sandeep Upadhyay, Sharmistha Banerjee, Vinay Kumar Nandicoori & Sanjeev Khosla. Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection.

Scientific Reports 6, Article number: 25006 (2016) doi:10.1038/srep25006

2016

Oliver J Hickman, Richard A Smith, Prokar Dasgupta, Sudha Narayana Rao, Soumya Nayak, Shubha Sreenivasan, Annapurna Vyakarnam and Christine Galustian. Expression of two WFDC1/ps20 isoforms in prostate stromal cells induces paracrine apoptosis through regulation of
PTGS2/COX-2.

British Journal of Cancer 114, 1235-1242 (24 May 2016)doi:10.1038/bjc.2016.91

2016

Mohan A, Singh RS, Kumari M, Garg D, Upadhyay A, Ecelbarger CM, et al. (2016) Urinary Exosomal microRNA-451-5p Is a Potential Early Biomarker of Diabetic Nephropathy in Rats.

PLoS ONE 11(4): e0154055. doi:10.1371/journal. pone.0154055

2016

Kushal N. Gohil, Priya S. Neurgaonkar, Aditi Paranjpe, Syed G. Dastager , Mahesh S. Dharne. Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions, Elsevier.

2016 June; Vol 8: 72–76.

2016

Manjima chatterjee, Upasana Mukherjee, Narmada Ashok, Raja Das, Suvrajit Das and Radha Saraswathy. MCP polymorphism, environmental risk factors and asthma – a hospital based study in vellore.

Int J Pharm Bio Sci 2016 April; 7(2): (B) 598 – 605.

2016

Hittalmani S, Mahesh HB, Mahadevaiah C, Prasannakumar MK. De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways.

BMC Genomics. 2016;17(1):271.

2016

Haddad NJ, Batainh A, Saini D, et al. Evaluation of Apis mellifera syriaca Levant region honeybee conservation using comparative genome hybridization.

Genetica. 2016;

2016

Nair RG, Kaur G, Khatri I, Singh NK, Maurya SK, et al. (2016) Genome Mining and Comparative Genomic Analysis of Five Coagulase-Negative Staphylococci (CNS) Isolated from Human Colon and Gall Bladder.

J Data Mining Genomics Proteomics 7: 192. doi:10.4172/2153-0602.1000192

2016

Saxena S, Saxena VK, Tomar S, Sapcota D, Gonmei G. Characterization of caecum and crop microbiota of Indian indigenous chicken targeting multiple hypervariable regions within 16s rRNA gene.

Br Poult Sci. 2016;

2016

Balachander GM, Balaji SA, Rangarajan A, Chatterjee K. Enhanced Metastatic Potential in a 3D Tissue Scaffold toward a Comprehensive in Vitro Model for Breast Cancer Metastasis.

ACS Appl Mater Interfaces. 2015;7(50):27810-22.

2016

Kushwaha P, Khedgikar V, Sharma D, et al. MicroRNA 874-3p Exerts Skeletal Anabolic Effects Epigenetically during Weaning by Suppressing Hdac1 Expression.

J Biol Chem. 2016;291(8):3959-66.

2016

2015 Publications

Lekha G, Gupta T, Awasthi AK, Murthy GN, Trivedy K, Ponnuvel KM. Genome wide microarray based expression profiles associated with BmNPV resistance and susceptibility in Indian silkworm races of Bombyx mori.

Genomics. 2015;106(6):393-403.

2015

Andreuzza S, Nishal B, Singh A, Siddiqi I. The Chromatin Protein DUET/MMD1 Controls Expression of the Meiotic Gene TDM1 during Male Meiosis in Arabidopsis.

PLoS Genet. 2015;11(9):e1005396.

2015

Sundaresan S, Philosoph-hadas S, Riov J, Mugasimangalam R, Kuravadi NA, Kochanek B, Salim S, Tucker ML and Meir S(2015) De novo transcriptome sequencing and development of abscission zone-specific microarray as a new molecular tool for analysis of tomato organ abscission. Front.

Plant Sci. 6:1258. doi:10.3389/fpls.2015.01258

2015

Kim J, Sundaresan S, Philosoph-hadas S, Yang R, Meir S, Tucker ML. Examination of the Abscission-Associated Transcriptomes for Soybean, Tomato, and Arabidopsis Highlights the Conserved Biosynthesis of an Extensible Extracellular Matrix and Boundary Layer.

Front Plant Sci. 2015;6:1109.

2015

Front Plant Sci. 2015;6:1109.

2015

Archana S, Enketeswara S, Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing, (2015),

doi:10.1016/j.gdata.2015.12.004

2015

Mohan A, Bhosle A, Chandra N. 2015. Complete genome sequences of an Escherichia coli laboratory strain and trimethoprim-resistant (TMP32XR) mutant strains.

Genome Announc 3(6):e01434-15.doi:10.1128/genomeA.01434-15.

2015

Sathishkumar Y, Krishnaraj C, Rajagopal K, Sen D, Lee YS. High throughput de novo RNA sequencing elucidates novel responses in Penicillium chrysogenum under microgravity.

Genome Announc 3(6):e01434-15.doi:10.1128/genomeA.01434-15.

2015

Mondal TK, Ganie SA, Debnath AB (2015) Identification of Novel and Conserved miRNAs from Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice.

PLoS ONE 10(10): e0140675. doi:10.1371/journal.pone.0140675

2015

Kumar A, Henrissat B, Arvas M, Syed MF, Thieme N, Benz JP, et al. (2015) De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulisStrain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster.

PLoS ONE 10(10): e0140398. doi:10.1371/journal.pone.0140398

2015

Ravishankar, K.V., Megha, H.S., Rekha, A., Khadke, G.N., Veerraju, C.H., Insights into Musa balbisiana and Musa acuminata species divergence and development of genic microsatellites by transcriptomics approach, (2015)

doi:10.1016/j.plgene.2015.09.007

2015

Chakka D, Gudla R, Madikonda AK, et al. The organophosphate degradation (opd) island borne esterase induced metabolic diversion in E. coli and its influence on p-nitrophenol degradation.

J Biol Chem. 2015;

2015

Desler C, Frederiksen JH, Angleys M, et al. Increased deoxythymidine triphosphate levels is a feature of relative cognitive decline.

Mitochondrion. 2015;

2015

Chhakchhuak L, De mandal S, Gurusubramanian G, et al. Complete mitochondrial genome of the Himalayan honey bee, Apis laboriosa.

Mitochondrial DNA. 2015;:1-2.

2015

Sahoo RK, Subudhi E , Kumar M. Investigation of bacterial diversity of hot springs of Odisha, India.

Genomics Data 2015.

2015

Pathak BR, Breed AA, Apte S, Acharya K, Mahale SD. Cysteine-rich secretory protein 3 plays a role in prostate cancer cell invasion and affects expression of PSA and ANXA1.

Mol Cell Biochem. 2015;

2015

Chatterjee S, Alampalli SV, Nageshan RK, Chettiar ST, Joshi S, Tatu US. Draft genome of a commonly misdiagnosed multidrug resistant pathogen Candida auris.

BMC Genomics. 2015;16(1):686.

2015

Halder P, Kumar R, Jana K, et al. Gene expression profiling of Mycobacterium tuberculosis Lipoarabinomannan-treated macrophages: A role of the Bcl-2 family member A1 in inhibition of apoptosis in mycobacteria-infected macrophages.

IUBMB Life. 2015;

2015

Garg A, Agrawal L, Misra RC, Sharma S, Ghosh S. Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes.

BMC Genomics. 2015;16:659.

2015

M. Muthusamy, S. Uma, S. Backiyarani, M. S. Saraswathi.Genome-wide screening for novel, drought stress-responsive long non-coding RNAs in drought-stressed leaf transcriptome of drought-tolerant and -susceptible banana (Musa spp) cultivars using Illumina high-throughput sequencing.

Plant Biotechnology Reports 2015.

2015

Kamala, S.; Makeshkumar, T. Transcriptome profiling of in vitro lines propagated from corm bud tip of elephant foot yam (Amorphophallus paeoniifolius) approves complete potyviruses elimination.

European Journal of Plant Pathology 2015.

2015

Meir, S., Sundaresan, S., Riov, J., Agarwal, I., & Philosoph-Hadas, S. (2015). Role of auxin depletion in abscission control.

Stewart Postharvest Review,11(2), 1-15.

2015

Srivastava PL, Daramwar PP, Krithika R, Pandreka A, Shankar SS, Thulasiram HV. Functional Characterization of Novel Sesquiterpene Synthases from Indian Sandalwood, Santalum album.

Sci Rep. 2015;5:10095.

2015

Subudhi AK, Boopathi PA, Pandey I, et al. Disease specific modules and hub genes for intervention strategies: A co-expression network based approach for Plasmodium falciparum clinical isolates.

Infect Genet Evol. 2015;35:96-108.

2015

Mathan kumar R, Kaur G, Kumar N, et al. Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a novel halotolerant bacterium isolated from marine sediment.

Int J Syst Evol Microbiol. 2015;

2015

Chhakchhuak L, De mandal S, Gurusubramanian G, Nachimuthu SK. The near complete mitochondrial genome of the Giant honey bee, Apis dorsata (Hymenoptera: Apidae: Apinae) and its phylogenetic status.

Mitochondrial DNA. 2015;:1-2.

2015

Sahu DK, Panda SP, Meher PK, et al. Construction, De-Novo Assembly and Analysis of Transcriptome for Identification of Reproduction-Related Genes and Pathways from Rohu, Labeo rohita (Hamilton).

PLoS ONE. 2015;10(7):e0132450.

2015

Dholaniya PS, Ghosh S, Surampudi BR, Kondapi AK. A knowledge driven supervised learning approach to identify gene network of differentially up-regulated genes during neuronal senescence in Rattus norvegicus.

BioSystems. 2015;

2015

Cheedipudi S, Puri D, Saleh A, et al. A fine balance: epigenetic control of cellular quiescence by the tumor suppressor PRDM2/RIZ at a bivalent domain in the cyclin a gene.

Nucleic Acids Res. 2015;

2015

Abraham A, Varatharajan S, Karathedath S, et al. RNA expression of genes involved in cytarabine metabolism and transport predicts cytarabine response in acute myeloid leukemia.

Pharmacogenomics. 2015;:1-14.

2015

Vanlalruati C, Mandal S, Gurusubramanian G, Senthil kumar N. Complete mitochondrial genome of Chocolate Pansy, Junonia iphita (Lepidoptera: Nymphalidae: Nymphalinae).

Mitochondrial DNA. 2015;1-2.

2015

Manjegowda MC,Deb G,Kumar N,Limaye AM. Expression profiling of genes modulated by estrogen, EGCG or both in MCF-7 breast cancer cells.

Genomics Data. 2015

2015

Nithin C, Patwa N, Thomas A, Bahadur RP, Basak J. Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures.

BMC Plant Biol. 2015;15(1):140.

2015

Gupta KP, Dholaniya PS, Chekuri A, Kondapi AK. Analysis of gene expression during aging of CGNs in culture: implication of SLIT2 and NPY in senescence.

Age (Dordr). 2015;37(3):9789.

2015

Shukla A, Singh VK, Bharadwaj DR, et al. De Novo Assembly of Bitter Gourd Transcriptomes:Gene Expression and Sequence Variations in Gynoecious and Monoecious Lines.

PLoS ONE. 2015;10(6):e0128331.

2015

Subudhi AK, Boopathi PA, Pandey I, et al. Plasmodium falciparum Complicated Malaria: Modulation and Connectivity between Exportome and Variant Surface Antigen Gene Families.

Mol Biochem Parasitol. 2015.

2015

Sahoo L, Kumar S, Das SP, et al. Complete mitochondrial genome sequence of Heteropneustes fossilis obtained by paired end next generation sequencing.

Mitochondrial DNA. 2015;:1-2

2015

Rastogi S, Kalra A, Gupta V, et al. Unravelling the genome of Holy basil: an “incomparable” “elixir of life” of traditional Indian medicine.

BMC Genomics. 2015;16:413.

2015

Padiadpua J, Baloni P, Chandra N. Gene expression profiles of wild-type and isoniazid-resistant strains of Mycobacterium smegmatis.

Science Direct. 2015

2015

Fonseca DJ, Patiño LC, Suárez YC, et al. Next generation sequencing in women affected by nonsyndromic premature ovarian failure displays new potential causative genes and mutations.

Fertil Steril. 2015

2015

Ghag SB, Shekhawat UK, Ganapathi TR. Small RNA Profiling of Two Important Cultivars of Banana and Overexpression of miRNA156 in Transgenic Banana Plants.

PLoS ONE. 2015;10(5):e0127179.

2015

B. Kesavan, K.V. Srividhya, S. Krishnaswamy, Mugasimangalam Raja, N. Vidya, A.V.S.K. Krishna Mohan. Understanding the virulence of the entero-aggregative E.

coli O104:H4.Int. J. of Bioinformatics Research and Applications. 2015

2015

Arya R, R R, Rs S and Princy S. SarA based Novel Therapeutic Candidate against Staphylococcus aureus associated with Vascular Graft Infections.

Front. Microbiol.2015

2015

Kanaujia PK, Bajaj P, Singhal N, et al. Proteomic analysis of Yersinia enterocolitica biovar 1A under iron-rich and iron-poor conditions indicate existence of efficiently regulated mechanisms of iron homeostasis.

Journal of Proteomics. 2015

2015

Chakraborty N, Sharma P, Kanyuka K, et al. Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation.

PLoS ONE. 2015;10(2):e0117819.

2015

Bose D, Shetty M, Kutty A.V.M, et al. Molecular Delineation of Partial Trisomy 14q and Partial Trisomy 12p in a Patient with Dysmorphic Features, Heart Defect and Developmental Delay.

Front. Microbiol.2015

2015

Vaid N, Pandey P, Srivastava VK, Tuteja N. Pea lectin receptor-like kinase functions in salinity adaptation without yield penalty, by alleviating osmotic and ionic stresses and upregulating stress-responsive genes.

Plant Mol Biol. 2015.

2015

Kumar D, Datta R, Hazra S, Sultana A, Mukhopadhyay R, Chattopadhyay S. Transcriptomic Profiling of Arabidopsis thaliana Mutant pad2.1 in Response to Combined Cold and Osmotic Stress.

PLoS ONE. 2015;10(3):e0122690.

2015

Chendamarai E, Ganesan S, Alex AA, et al. Comparison of newly diagnosed and relapsed patients with acute promyelocytic leukemia treated with arsenic trioxide: insight into mechanisms of resistance.

PLoS ONE. 2015;10(3):e0121912.

2015

Pallavi B, Shankar KM, Abhiman PB, Iqlas A.Identification of putative genes involved in parasitism in the anchor worm, Lernaea cyprinacea by de novo Transcriptome analysis.

Experimental Parasitology. 2015

2015

Rajagopal I, Sankareswaran UM. An Adaptive Particle Swarm Optimization Algorithm for Solving DNA Fragment Assembly Problem.

Current Bioinformatics. 2015

2015

Srivastava VK, Suneetha KJ, Kaur R. The mitogen-activated protein kinase CgHog1 is required for iron homeostasis, adherence and virulence in Candida glabrata.

FEBS J. 2015.

2015

Banerjee A, Ghoshal PK, Sengupta K.Novel Linkage of LMNA Single nucleotide polymorphism with Dilated Cardiomyopathy in an Indian case study.

IJC Heart & Vasculature. 2015

2015

Rai R, Javvadi S, Chatterjee S. Cell-cell signaling promotes ferric iron uptake in Xanthomonas oryzae pv. oryzicola that contribute to its virulence and growth inside rice.

Mol Microbiol. 2015.

2015

Sen D, Chandrababunaidu MM, Singh D, et al. Draft Genome Sequence of the Terrestrial Cyanobacterium Scytonema millei VB511283, Isolated from Eastern India.

Genome Announc. 2015;3(2)

2015

Mittra I, Khare NK, Raghuram GV, Chaubal R, Khambatti F, Gupta D, Gaikwad A, Prasannan P, Singh A, Iyer A, Singh A, Upadhyay P, Nair NK, Mishra PK and Dutt A. Circulating nucleic acids damage DNA of healthy cells by integrating into their genomes.J.

Biosci. 40 91–111.2015

2015

Swain S, Singh N and Nandi AK. Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.J.

Biosci. 40 137–146.2015

2015

Haddada NJ, AlShagoora B, Batainh AM, et al. Draft genome sequence of the Algerian bee Apis mellifera intermissa.

Genomics Data. 2015

2015

Tirumalai PS. Metabolic Gene Expression Shift by Listeria monocytogenes in Co-Culture Biofilms.

Canadian J of Microbiology. 2015

2015

Backiyarani S, Uma S, Nithya S, et al. Genome-Wide Analysis and Differential Expression of Chitinases in Banana Against Root Lesion Nematode (Pratylenchus coffeae) and Eumusa Leaf Spot (Mycosphaerella eumusae) Pathogens.

J Applied Biochemistry and Biotechnology. 2015

2015

Shekhar MS, Gomathi A, Gopikrishna G, Ponniah AG. Gene expression profiling in gill tissues of White spot syndrome virus infected black tiger shrimp Penaeus monodon by DNA microarray.

VirusDisease. 2015

2015

Goodsmith N, Guo XV, Vandal OH, et al. Disruption of an M. tuberculosis Membrane Protein Causes a Magnesium-dependent Cell Division Defect and Failure to Persist in Mice.

PLoS Pathog. 2015;11(2):e1004645.

2015

Mohan A, Padiadpu J, Baloni P, Chandra N. Complete Genome Sequences of a Mycobacterium smegmatis Laboratory Strain (MC2 155) and Isoniazid-Resistant (4XR1/R2) Mutant Strains.

Genome Announc. 2015;3(1)

2015

Malhotra V, Agrawal R,Duncan TR,Saini DK, Clark-Curtiss JE.Mycobacterium tuberculosis Response Regulators, DevR and NarL Interact In Vivo and Co-Regulate Gene Expression during Aerobic Nitrate Metabolism.

J Biol Chem. 2015

2015

Haddad NJ. Mitochondrial genome of the Levant Region honeybee, Apis mellifera syriaca (Hymenoptera: Apidae).

Mitochondrial DNA. 2015;:1-2.

2015

Gopurappilly R, Bhonde R. Transcriptional profiling and functional network analyses of islet-like clusters (ILCs) generated from pancreatic stem cells in vitro.

Genomics. 2015

2015

Haddad NJ, Batainh AM, Migdadi OS, et al. Next generation sequencing of Apis mellifera syriaca identifies genes for Varroa resistance and beneficial bee keeping traits.

Insect Sci. 2015

2015

Nature-inspired novel Cuckoo Search Algorithm for genome sequence assembly.

Sadhana J.2015

2015

Dasgupta MG, Dharanishanthi V, Agarwal I, Krutovsky KV. Development of genetic markers in eucalyptus species by target enrichment and exome sequencing.

PLoS ONE. 2015;10(1):e0116528.

2015

Mothe T, Sultanpuram VR. Metagenomic analysis of Lonar soda lake samples.

Int J Adv Res Biol Sci. 2015

2015

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