Basic Analysis:

  Raw data QC Report - QC of +ve and -ve controls, Intensities vs Background and Spikes
  Normalized Data - Best normalization for the platform.
  Normalized data QC Report - duplicated probes, duplicated genes and Conditional tree, Principle component Analysis (PCA), Scatter Plot for replicate samples.
  Differentially regulated gene list – Obtained using Volcano plot (two-fold up and down regulated list of with p-value less than 0.05)

Standard Data Analysis:

  Basic Data Analysis package PLUS
  Cluster of up and down regulated genes.
  Significant Gene ontology categories
  Report with – Gene ontology name, p-value and no.of. genes
  Significantly dysregulated pathways
  Report with – Pathway names, p-value and no.of.genes

Advanced Analysis:

  Standard Data analysis package PLUS
  Significant biological parameters obtained using Genotypic’s Biointerpreter
  Gene set enrichment analysis (GSEA) of co regulated genes.
  List of genes in Significantly dysregulated pathways