Genotypic Technology

MedRuner

About MedRuner:
MedRuner is a front line literature mining tool to analyze a large set of Pubmed abstracts* that are practically impossible to handle manually. After experiencing it, you will stop printing abstracts and going through them, which kills your valuable time and needs to put a lot of efforts to analyze them. Using MedRuner, what it might take hours manually, can be done in a few minutes.

* MedRuner was tested to handle 10,000 abstracts.

Highlights:

It has easy to use features considering the users, who are most likely to be biologists.

Easy to access as you can install it easily in your machine.

Analyze the abstracts in context of genes and diseases / functions.

Analyze the abstracts in context of different biological terms (Free Search)

Support of multiple gene identifiers viz. Gene Symbol, NCBI Gene ID, Unigene ID, Affymetrix, Agilent Probe Ids, ensEMBL etc.

Relationship table between the genes and disease with number of citations in the abstracts

Evidence report with extracted lines from the abstracts with respect to gene and disease.

Login

MedRuner is available here for demo use.

Click here to login to the demo version of MedRuner.

Features

MedRuner significantly reduces the time in analyzing large volume of abstracts with the genes and terms. With MedRuner the user can find the relation between the gene and terms from the abstracts.

The key features of MedRuner are:

Analyze the abstracts in context of genes and diseases

Analyze the abstracts in context of different biological terms (Free Search)

Support of multiple gene identifiers

Relationship table between the genes and disease with number of citations in the abstracts

Evidence report with extracted lines from the abstracts with respect to gene and disease.

Multiple gene Identifiers:
Users can mine the abstracts with any of the following gene identifiers. MedRuner finds out the corresponding gene Symbol from the internal library and uses them for searching the abstracts.

	NCBI Gene ID		Refseq ID

	Affymetrix ID		Protein accession

	Agilent ID		Protein GI

	Unigene ID		Nucleotide GI

	TIGR ID		ENSembl ID

	Swissprot ID		Image Clone ID

	Swissprot Accession

Work Flow

User Manual

User Manual (PDF Download)

Free Demo

MedRuner is currently available on a free, time-limited, full-functionality access to users who have significant research interests.



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Experience in Research