What's New
Genotypic Specials
536 2020

Thangam Menon et al., Composition of the Oral Microbiome in Patients with Coronary Artery Disease. JCDR. 2020, Vol-14(9): DM01-DM03

Illumina sequencing
535 2020

Kalaimani Lavanya et al., (2020). MicroRNA Profiling of Highly Enriched Human Corneal

Epithelial Stem Cells by Small RNA Sequencing. Scientific Reports; London Vol. 10, Iss. 1.

RNA sequencing
534 2020

Sharma et al., (2020). Isolation and Characterization of Lytic Bacteriophages from Wastewater and its Application in Pathogen Reduction. Def. Life SCI. J.,5. 80-86. 10.

Illumina sequencing
533 2020

Ahlfors et al., Methods for reprogramming cells and uses thereof. United states patent US 16/752,535. United States Patent Application. 20, August 2020.  

Microarray, Biointerpreter
532 2020 Kumar, S., Bansal, K., Patil, P. P., Kaur, A., Kaur, S., Jaswal, V., … Patil, P. B. (2020). Genomic insights into evolution of extensive drug resistance in Stenotrophomonas maltophilia complex. Genomics. doi:10.1016/j.ygeno.2020.06.049  Nanopore sequencing
531 2020 Thinesh, T., Meenatchi, R., Lipton, A. N., Rangasamy Anandhan, D., Jose, P. A., Tang, S.-L., … Selvin, J. (2020). Metagenomic sequencing reveals altered bacterial abundance during coral-sponge interaction: insights into the invasive process of coral-killing sponge Terpios hoshinota. Microbiological Research, 126553. doi:10.1016/j.micres.2020.126553 Whole Metagenome sequencing
530 2020 Verma, P., Singh, N., Khan, S.A. et al. TIAs pathway genes and associated miRNA identification in Vinca minor: supporting aspidosperma and eburnamine alkaloids linkage via transcriptomic analysis. Physiol Mol Biol Plants (2020). https://doi.org/10.1007/s12298-020-00842-x RNA sequencing
529 2020

Gupta, O. P., Pandey, V., Saini, R., Narwal, S., Malik, V. K., Khandale, T., … Singh, G. P. (2020). Transcriptomic dataset reveals the molecular basis of genotypic variation in hexaploid wheat (T. aestivum L.) in response to Fe/Zn deficiency. Data in Brief, 31, 105995. doi:10.1016/j.dib.2020.105995 

RNA sequencing
528 2020 Javed, S., Bhattacharyya, S., Bagga, R. et al. Insulin growth factor-1 pathway in cervical carcinoma cancer stem cells. Mol Cell Biochem (2020). https://doi.org/10.1007/s11010-020-03807-6 Microarray
527 2020 Singhal, N., Pandey, D., Singh, N.S. et al. Exploring the genetic determinants underlying the differential production of an inducible chromosomal cephalosporinase - BlaB in Yersinia enterocolitica biotypes 1A, 1B, 2 and 4. Sci Rep 10, 10167 (2020) qRT-PCR
526 2020

Nair, M. G., Prabhu, J. S., Korlimarla, et al., (2020). miR18a activates Wnt pathway in ERpositive breast cancer and is associated with poor prognosis. Cancer Medicine. doi:10.1002/cam4.3183 

Microarray analysis
525 2020

A.Ganesh Kumar et al., Microbial Community Profile of Deep-Sea Sediment from Eastern Arabian Sea (IODP355). Dynamics of the Earth System: Evolution, processes and Interactions (2020)

524 2020 Guttikonda, H., Thummala, S.R., Agarwal, S. et al. Genome-wide transcriptome profile of rice hybrids with and without Oryza rufipogon introgression reveals candidate genes for yield. Sci Rep 10, 4873 (2020) Microarray
523 2020 Pallavi S, Prasd B et al., Arachis hypogea gene expression atlas (AhGEA) for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications (2020).Plant Biotechnology Journal. RNA-seq
521 2020 Das, S., Swetha, C., Pachamuthu, K. et al. Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs. Plant Reprod (2020) sRNA and RNA-seq
520 2020

Desingu Ayyappa Raja, Yogaspoorthi Subramaniam, et al.,  Histone variant dictates fate biasing of neural crest cells to melanocyte lineage. Development (2020)

519 2020

Vinod Kumar, Sushmita Das, et al., Leishmania donovani infection induce differential miRNA expression in CD4+ T cells. Scientific Reports (2020)

Small RNA Sequencing
518 2020

Resma R, Alekhya R C, et al., 16S rRNA sequence data of Bombyx mori gut bacteriome after spermidine supplementation (2020) BMC Research Notes

Metagenome sequencing
517 2020

A. K. Singh, R. C. Upadhyay et al., Genomewide expression analysis of the heat stress response in dermal fibroblasts of Tharparkar (zebu) and Karan-Fries (zebu × taurine) cattle, Springer (2020)

516 2020

Tyagi K, Chakraborty R et al., Rearrangement and evolution of mitochondrial genomes in Thysanoptera (Insecta),Scientific Reports (2020)


Mitochondrial Genome Sequencing
515 2020 Sujay P, Erika S, et al., A de novo transcriptomic approach to study the influence of marine water depth in Macrocystis pyrifera alginate production, Aquatic Botany(2020)


Denovo transcriptome sequencing
514 2020
Fernandes Genevieve L., Shenoy Belle Damodara, Damare Samir R.,Diversity of Bacterial Community in the Oxygen Minimum Zones of Arabian Sea and Bay of Bengal as Deduced by Illumina Sequencing, Frontiers in Microbiology(2020)     
Amplicon Sequencing
513 2020 Tyagi, K., Chakraborty, R., Cameron, S.L. et al. Rearrangement and evolution of mitochondrial genomes in Thysanoptera (Insecta). Sci Rep 10, 695 (2020).  Whole genome sequencing
512 2020 Gundu HR.,The Tsunami of Cardiometabolic Diseases: An Overview, J Diabetes Obe Meta Syn,2019 Sequencing
511 2020

N.Ramesh et al., Biomass Utilization of Burma Reed (Neyraudia reynaudiana) by an alkaliphilic cellulase free Xylanase Producing Saccharopolys pora antimicrobica strain 20-23, Journal of Applicable Chemistry, 2019

510 2020 Anjitha, R., Antony, A., Shilpa, O., Anupama, K. P., Mallikarjunaiah, S., & Gurushankara, H. P. (2020). Malathion induced cancer-linked gene expression in human lymphocytes. Environmental Research, 109131. Microarray
509 2020 Kumar, V., Tyagi, K., Chakraborty, R. et al. The Complete Mitochondrial Genome of endemic giant tarantula, Lyrognathus crotalus (Araneae: Theraphosidae) and comparative analysis. Sci Rep 10, 74 (2020) Whole genome sequencing
508 2019

Alterations of salivary microbial community associated with oropharyngeal and hypopharyngeal squamous cell carcinoma patients. Panda M, Rai Ak et al., 2019

Metagenome sequencing
507 2019

High-throughput metabolomic and transcriptomic analyses vet the potential route of cerpegin biosynthesis in two varieties of Ceropegia bulbosa Roxb

Sachin A. Gharat, Balkrishna A. Shinde et al.,

Transcriptome sequencing
506 2019

Identification of Novel microRNAs and their targets in chlorophytum borivilianum by small RNA and degradome sequencing. Monika K, Nishant K et al.,KeAI 2019

Next generation sequencing
505 2019 Identification if miRNA targets by AtFT overexpression in Tobacco Degradome sequencing
504 2019

Overexpression of native Musa-miR397 enhances plant biomass without compromising abiotic stress tolerance in banana. Prashanti P, Karuna Y, Scientific Reports (2019), Volume 9.


Transcriptome Sequenicng
503 2019

First Draft Genome Sequence of Wheat Spot Blotch Pathogen Bipolaris sorokiniana BS_112 from India, Obtained Using Hybrid Assembly

Rashmi Aggarwal,Sapna Sharma

American Society for Microbiology

Nanopore Technology
502 2019

Asparagus racemosus bZIP transcription factor-regulated squalene epoxidase (ArSQE) promotes germination and abiotic stress tolerance in transgenic tobacco

Swati Upadhyay, Gajendra Singh Jeena

Science Direct

NGS services
501 2019

Himanshu Sharma and B. Anand, Ribosome assembly defects subvert initiation Factor3 mediated scrutiny of bona fide start signal, Nucleic acids Research

NGS services
500 2019

Celecoxib potentiates antibiotic uptake by altering membrane potential and permeability in Staphylococcus aureus

Gajapati Y. N. Varma. Githavani Kummari

499 2019

Analysis of molecular switch between leukocyte and substrate adhesion in bone marrow endothelial cells

Swati Gupta, Gurudutta Gangenahalli

498 2019

Transcriptomic analysis of a Sorghum bicolor landrace identifies a role for beta-alanine betaine biosynthesis in drought tolerance

N. Devnaraina,B.G. Crampton

497 2019

The sensor kinase MtrB of Mycobacterium tuberculosis regulates hypoxic survival and establishment of infection

Srijon KB, Suruchi L

496 2019 Diana Pradhan, Vidya Devi Negii et al., Repeated in-vitro and in-vivo exposure leads to genetic alteration, adaptations, and hypervirulence in Salmonella, 2019 NGS services
495 2019 Genetic diversity and population structure of the threatened chocolate mahseer (Neolissochilus hexagonolepis McClelland 1839) based on SSR markers: implications for conservation management in Northeast India NGS services
494 2019

Functional annotation of differentially expressed genes under salt stress in Dichanthium annulatum

Anita Mann, Naresh Kumar et al.,

Ind J Plant Physiol., 2018

NGS services
493 2019

Vijayakumar M. Malathi, Ravi P. More, et al., Gut Bacterial Diversity of Insecticide-Susceptible and -Resistant Nymphs of the Brown Planthopper Nilaparvata lugens Stål (Hemiptera: Delphacidae) and Elucidation of Their Putative Functional Roles

Journal of microbial Biotechnology, 2018

NGS services
492 2019

Curcumin induced oxidative stress causes autophagy and apoptosis in bovine leucocytes transformed by Theileria annulata

Prasanna Babu Araveti & Anand Srivastava

NGS services
491 2019

A prospective radomized,double-blind,placebo-controlled,dose-response relationship study to investigate efficacy of fructo-oligosaccharides on human gut microflora

NGS services
490 2019

miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes

NGS services
489 2019

De novo assembly of the Indian blue peacock(Pavo Cristatus) genome using Oxford Nanopore Technology and Illumina Sequencing

NGS services
488 2019

Thiagarajan Y, Ashok kumar R, Sivakumaran T.S, Comparative study on Performance of graphite and Carbon Nano Tubes (CNT) coated SSM electrodes in cow dung slurry-fed Microbial fuel cell.

NGS services
487 2019 KMT1 family methyltransferases regulate heterochromatin–nuclear periphery tethering via histone and non-histone protein methylation Publication: EMBO Reports (2019) Authors: Radhika Arasala Rao , Alhad Ashok Ketkar, Neelam Kedia, Vignesh K Krishnamoorthy, Vairavan Lakshmanan, Pankaj Kumar , Abhishek Mohanty , Shilpa Dilip Kumar , Sufi O Raja , Akash Gulyani , Chandra Prakash Chaturvedi , Marjorie Brand ,Dasaradhi Palakodeti & Shravanti Rampalli February 12, 2019 NGS services
486 2019 Transcriptome profiling reveals genetic basis of disease resistance against Corynespora cassiicola in rubber tree (Hevea brasiliensis) Publication: Current Plant Biology 
Publisher: Elsevier. February 24, 2019 
NGS services
485 2019 Circular RNA Profiling by Illumina Sequencing via Template-Dependent Multiple Displacement Amplification Authors: Ashirbad Guria,Kavitha Velayudha Vimala Kumar,1 Nagesh Srikakulam, Anakha Krishnamma,Saibal Chanda, Satyam Sharma,Xiaofeng Fan, and Gopal Pandi, Journal: BioMed Research International
Volume 2019, Article ID 2756516, 12 pages
January 28, 2019
NGS services
484 2019 Next-Generation Sequencing Reveals the Role of Epigallocatechin-3-Gallate in Regulating Putative Novel and Known microRNAs Which Target the MAPK Pathway in Non-Small-Cell Lung Cancer A549 Cells Authors: Vaishali Bhardwaj and Abul Kalam Azad Mandal Journal: Molecules 2019 NGS services
483 2019 Genome‐wide analysis reveals miR‐3184‐5p and miR‐181c‐3p as a critical regulator for adipocytes‐associated breast cancer Authors: Dheeran Rajarajan  Sweetha Selvarajan  Mamilla R. Charan Raja  Santanu Kar Mahapatra  Ravi Kasiappan January 17, 2019  Publication: PNAS  NGS services
482 2019

A SIR-independent role for cohesin in subtelomeric silencing and organization Authors: Deepash Kothiwala and Shikha Lalorayaa Publication: PNAS, January 17, 2019

NGS services
481 2019

Identification and expression profiling of miRNAs in two color variants of carrot (Daucus carota L.) using deep sequencing 

Authors:Bhavana Bhan, Archana Koul, Deepak Sharma, Malik Muzafar Manzoor, Sanjana Kaul, Suphla Gupta, Manoj K. Dhar

 Publication: Plos One

March 7, 2019
NGS services
480 2019

Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane

Authors: Dyfed Lloyd Evans, Shailesh V. Joshi and Jianping Wang

Journal: BMC Evolutionary Biology2019 19:33 

NGS services
479 2018

Prophage-Driven Genomic Structural Changes Promote Bartonella Vertical Evolution

Ricardo G.,  Barak M., et al.,  

Genome Biology and Evolution, Volume 10, Issue 11, November 2018, Pages 3089–3103 

Nanopore Technology
478 2018

Differentially regulated gene expression in quiescence versus senescence and identification of ARID5A as a quiescence associated marker

T AnwarB Sen et al., Journal of Cellular Physiology, 2018


477 2018

Identification and characterization of miRNA transcriptome in Jatropha curcas by high-throughput sequencing

VN Prakash, VJ Jadeja

Plant gene, 2018 - Elsevier

NGS services
476 2018

Evidence for up and down regulation of 450 genes by rpoB12 (rif) mutation and their implications in complexity of transcription modulation in Escherichia coli

S Meenakshi, MH Munavar

Microbiological research, 2018 - Elsevier

NGS services
475 2018 A snapshot of gut microbiota of an adult utban population from Western region of India NGS services
474 2018 Deepika Pandey Tiwari, Poonam Mishra Chatterjee, Harish Rotti, Bipin Chand, Ritu Raval, Ashok Kumar Dubey; Expression dynamics of the poly-γ-glutamic acid biosynthesis genes of Bacillus subtilis in response to glucose and glutamic acid-A pilot study, FEMS Microbiology Letters, , fny248, https://doi.org/10.1093/femsle/fny248 Microarray Services
473 2018

A Splicing-Independent Function of RBM10 Controls Specific 3′ UTR Processing to Regulate Cardiac Hypertrophy,

Cell Reports, Volume 24, Issue 13, September 2018, Pages 3539-3553

Nimmy Mohan, Vikas Kumar, Divya T. Kandala, Chandrasekharan C. Kartha, Rakesh S. Laishram, 

Microarray Services
472 2018 Ahmed A, Adiga V, Nayak S, Uday Kumar JAJ, Dhar C, et al. (2018) Circulating HLA-DR+CD4+ effector memory T cells resistant to CCR5 and PD-L1 mediated suppression compromise regulatory T cell function in tuberculosis. PLOS Pathogens 14(9):e1007289. https://doi.org/10.1371/journal.ppat.1007289 NGS Services
471 2018 Anand, Atul, Jayaramaiah, Ramesha H., Beedkar, Supriya D., Dholakia, Bhushan B., Lavhale, Santosh G., Punekar, Sachin A., Gade, Wasudeo N., Thulasiram, Hirekodathakallu V., Giri, Ashok P. Terpene profiling, transcriptome analysis and characterization of cis-β-terpineol synthase from Ocimum. Physiology and Molecular Biology of Plants.  0974-0430. October 2018. https://doi.org/10.1007/s12298-018-0612-6 NGS Services
470 2018 Shantanu Kundu, Vikas Kumar, Kaomud Tyagi, Rajasree Chakraborty, Iftikar Rahaman, Kailash Chandra. Complete mitochondrial genome of Indian tent turtle,Pangshura tentoria and comparative mitochondriomics. PeerJ Preprints. September 2018. https://doi.org/10.7287/peerj.preprints.27202v1 NGS Services
469 2018 Mondal, Tapan Kumar, Rawal, Hukam Chand, Chowrasia, Soni, Varshney, Deepti, Panda, Alok Kumar, Mazumdar, Abhishek, Kaur, Harmeet, Gaikwad, Kishor, Sharma, Tilak Raj, Singh, Nagendra Kumar. September 2018. Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes. Scientific Reports. 13698 VL. 2045-2322. https://doi.org/10.1038/s41598-018-31518-y  Nanopore Sequencing Services
468 2018 Ondara Zablon Kerima, Pathappa Niranjana, Vinay Kumar B.S., Rajeshwari Ramachandrappa, Sharanappa Puttappa, Yadavalli Lalitha, Sushil K.Jalali, Chandish R.Ballal, Hirekodathakallu V.Thulasiram. De novo transcriptome analysis of the egg parasitoid Trichogramma chilonis Ishii (Hymenoptera: Trichogrammatidae): A biological control agent. Gene Reports. Volume 13, December 2018, Pages 115-129 NGS Services
467 2018 Sowmya Handenahally Reddy Sumanth Kumar Kambalimath Rajesh Kumar Singhal Manjunath K Chikkakariyappa Raveendran Muthurajan Mavinahalli P Rajanna Rohini Sreevathsa Amitha Mithra Sevanthi Trilochan Mohapatra Sarala Neelamraju Viswanathan Chinnuswamy S Gopal Krishnan Ashok K Singh Nagendra K Singh Rameshwar P Sharma Sreeman M Sheshshayee. Allele specific analysis of single parent backcross population identifies HOX10 transcription factor as a candidate gene regulating rice root growth. 03 September 2018. https://doi.org/10.1111/ppl.12826 NGS Services
466 2018 Nair, Raji R. Madiwale, Shreyas V. Saini, Deepak Kumar, August 2018. Clampdown of inflammation in aging and anticancer therapies by limiting upregulation and activation of GPCR, CXCR4. npj Aging and Mechanisms of Disease. 2056-3973. https://doi.org/10.1038/s41514-018-0028-0 NGS Services
465 2018 Manoharan Shankar, Anbazhagan Mageswari, Chandrasekaran Suganthi, Paramasamy Gunasekaran, Kodiveri M. Gothandam, Sivashanmugam Karthikeyan. Genome Sequence of a Moderately Halophilic Bacillus cereus Strain, TS2, Isolated from Saltern Sediments. Microbiol Res Announc Aug 2018, 7 (6) e00873-18; DOI: 10.1128/MRA.00873-18 NGS Services
464 2018 Vishal Singh Somvanshi, Madhura Tathode, Rohit Nandan Shukla, Uma Rao, Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, Meloidogyne graminicola. Journal of Nematology. VOLUME 50 , ISSUE 2 , ISSN (Online) , DOI: 10.21307/jofnem-2018-018, September 2018. The Society of Nematologists NGS Services
463 2018
Usha R. Dutta, Sudha N. Rao, Vijaya Kumar Pidugu, Vineeth V.S., Amrita Bhattacherjee, Aneek Das Bhowmik, Sathish K. Ramaswamy, Kumar Gautam Singh, Ashwin Dalal, Breakpoint mapping of a novel de novo translocation t(X;20)(q11.1;p13) by positional cloning and long read sequencing, Genomics, 2018, https://doi.org/10.1016/j.ygeno.2018.07.005.
Nanopore Sequencing
462 2018  Varudkar A, Ramakrishnan U. Gut microflora may facilitate adaptation to anthropic habitat: A comparative study in Rattus. Ecol Evol. 2018;8:6463–6472. https://doi.org/10.1002/ece3.4040 NGS Services
461 2018
Gundu H R. Cellular and Molecular Medicine Approaches to Therapy. Developments Clin Med Pathol. 1(3). DCMP.000511.2018.
NGS Services
460 2018
Madhu Choudhary, Parbodh C. Sharma, Hanuman S. Jat, Abhinandita Dash, Balaji Rajashekar, Andrew J. McDonald, Mangi L. Jat, Soil bacterial diversity under conservation agriculture-based cereal systems in Indo-Gangetic Plains, 3 Biotech (2018) 8: 304. https://doi.org/10.1007/s13205-018-1317-9
NGS Services
459 2018 Isha Pandey, Ramandeep Kaur, Amit Kumar Subudhi, P.A Boopathi, Raja C. Mugasimangalam, Sudha N. Rao, Mohammed Aiyaz, Sanjay Kochar, Dhanpat Kochar, Ashis Das, A tiling array-based comparative genomic hybridization approach to predict copy number variations between Plasmodium falciparum field isolates from the Indian Sub-continent [version 1; referees: awaiting peer review] F1000Research 2018, 7:1033 (doi: 10.12688/f1000research.14599.1) Microarray Services
458 2018 Suganthi C, Mageswari A, Shankar M, Gothandam KM, Karthikeyan S. 2018. Genome sequence of Bacillus vallismortis TD3, a salt-tolerant strain isolated from the sediments of a solar saltern in Tamil Nadu, India. Microbiol Resour Announc 7:e00817-18. https://doi.org/10.1128/MRA.00817-18. NGS Services
457 2018
Remya Nair, Nitesh K. Khandelwal, Md. Shariq, Archana K. Redhu, Naseem A. Gaur, Shamim Shaikh, Rajendra Prasad, Identification of genome-wide binding sites of heat shock factor 1, Hsf1, under basal conditions in the human pathogenic yeast, Candida albicans, AMB Expr (2018) 8: 116. https://doi.org/10.1186/s13568-018-0647-7
NGS Services
456 2018
Vidya, S., Kumar, H. S. Vijay, Bhatt, R, Laxman, R. H, Ravishankar, K. V., Transcriptional profiling and genes involved in acquired thermotolerance in Banana: a non-model crop, August 2018, Scientific Reports, 10683, Volume 8IS, 2045-2322, 10.1038/s41598-018-27820-4
NGS Services
455 2018
Singh, S.K., Dhawan, S.S., Lal, R.K. et al. Biochemical characterization and spatio-temporal analysis of the putative l-DOPA pathway in Mucuna pruriens Planta (2018). https://doi.org/10.1007/s00425-018-2978-7
NGS Services
454 2018
Vishal Singh Somvanshi, Madhura Tathode, Rohit Nandan Shukla, Uma Rao, Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, Meloidogyne graminicola, Journal of Nematology. VOLUME 50 , ISSN (Online) , DOI: 10.21307/jofnem-2018-018, July 2018 © 2018.© The Society of Nematologists
NGS Services
453 2018
Asmaa Missoum, DNA Microarray and Bioinformatics Technologies: A mini-review, Proceedings of the Nature Research Society, 2, 02010 (2018). doi: 10.11605/j.pnrs.201802010
Microarray Services
452 2018
Sundaresan, Srivignesh, Philosoph Hadas, Sonia Ma, Chao - Jiang, Cai-Zhong, Riov, Joseph, Mugasimangalam, Raja, Kochanek, Betina, Salim, Shoshana, Reid, Michael S., Meir, Shimon, The Tomato Hybrid Proline-rich Protein regulates the abscission zone competence to respond to ethylene signals, Horticulture Research 2018, Volume 5, Issue 1, Pages 2052-7276
MicroArray Services
451 2018 Ramasamy Yasodha, Ramesh Vasudeva, Swathi Balakrishnan, Ambothi Rathnasamy Sakthi, Nicodemus Abel, Nagarajan Binai, Balaji Rajashekar, Vijay Kumar Waman Bachpai, Chandrasekhara Pillai, Suma Arun Dev; Draft genome of a high value tropical timber tree, Teak (Tectona grandis L. f): insights into SSR diversity, phylogeny and conservation, May 2018, DNA Research Nanopore Sequencing
450 2018
Chandreyee Datta  Arijita Subuddhi  Manish Kumar  Thurbu Tshering Lepcha  Sohini Chakraborty Kuladip Jana  Zhumur Ghosh  Asish Kumar Mukhopadhyay  Joyoti Basu  Manikuntala Kundu, Genome‐wide mRNA–miRNA profiling uncovers a role of the microRNA miR‐29b‐1‐5p/PHLPP1 signalling pathway in Helicobacter pylori‐driven matrix metalloproteinase production in gastric epithelial cells, Cellular Microbiology, May 2018
MicroArray Analysis
449 2018
Mohammad Rumman, Abhijit Majumder, Linda Harkness, Balu Venugopal, M.B. Vinay, Malini S. Pillai, Moustapha Kassem, Jyotsna Dhawan, Induction of quiescence (G0) in bone marrow stromal stem cells enhances their stem cell characteristics, Stem Cell Research, Volume 30, 2018, Pages 69-80, ISSN 1873-5061
MicroArray Services
448 2018 Sundaresha S., Sharma Sanjeev, Shandil Rajesh K., Sharma Sadhana, Thakur Vandana, Bhardwaj Vinay, Kaushik Surinder K., Singh Bir Pal, Chakrabarti Swarup K. (2018) An insight into the downstream analysis of RB gene in F1 RB potato lines imparting field resistance to late blight. Functional Plant Biology  MicroArray Services
447 2018
Roopali Pradhan, Devika Ranade, Kundan Sengupta; Emerin modulates spatial organization of chromosome territories in cells on softer matrices (April 2018), Nucleic Acids Research, gky288, 
NGS Services
446 2018 Himabindu Kudapa  Vanika Garg  Annapurna Chitikineni  Rajeev K. Varshney. (April 2018) The RNA‐Seq based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio‐temporal changes associated with growth and development. Plant Cell Environment, https://doi.org/10.1111/pce.13210 NGS Services
445 2018 Tandon D, Haque MM, R. S, Shaikh S, P. S, Dubey AK, et al. (2018) A snapshot of gut microbiota of an adult urban population from Western region of India. PLoS ONE 13(4):e0195643. 10.1371/journal.pone.0195643  NGS Services
444 2018 Genome sequence and comparative analysis of Bacillus cereus BC04, reveals genetic diversity and alterations for antimicrobial resistance. (2018) Srinivasan, V.B., Angrasan, M., Chandel, N. et al. Funct Integr Genomics (2018). Springer Berlin Heidelberg 1438-793X. https://doi.org/10.1007/s10142-018-0600-5 NGS Services
443 2018

Suresh H. Basagoudanavar, Madhusudan Hosamani, R. P. Tamil Selvan, B. P. Sreenivasa, Aniket Sanyal, R. Venkataramanan (April 2018). Host serum microRNA profiling during the early stage of foot-and-mouth disease virus infection. Archives of Virology pp 1–9.

MicroArray Services
442 2018 Nutan Thakur, Harish Changotra, Neelam Grover, Jitendraa Vashistt (June 2018). Elucidation of bacterial species during childhood diarrhea through 16S rRNA Illumina Miseq approach. Meta Gene, Volume 16, Pages 234-240 NGS Services
441 2018 S. Wajih A. Naqvi, Phyllis Lam, Gayatree Narvenkar, Amit Sarkar, Hema Naik, Anil Pratihary, Damodar M. Shenoy, Mangesh Gauns, Siby Kurian, Samir Damare, Manon Duret, Gaute Lavik & Marcel M. M. Kuypers (February 2018). Methane stimulates massive nitrogen loss from freshwater reservoirs in India. Nature Communications Article number: 1265. NGS Services
440 2018
Nizar Jamal Haddad, Noureddine Adjlane, Deepti Saini, Athul Menon, Venkatesh Krishnamurthy, Devan Jonklaas J., Paul Tomkins, Wahida Loucif‐Ayad, Lisa Horth (March 2018). Whole‐genome sequencing of north African honey bee Apis mellifera intermissa to assess its beneficial traits. Entomological Research.
NGS Services
439 2018

Erika Salavarría, Sujay Paul, Patricia Gil‑Kodaka, Gretty K. Villena. ( April 2018). First global transcriptome analysis of brown algae Macrocystis integrifolia (Phaeophyceae) under marine intertidal conditions. 3Biotech, Vol 8:185

NGS Services
438 2018 Mubashshir Rasheed, Anamika Battu and Rupinder Kaur. Aspartyl proteases in Candida glabrata are required for suppression of the host innate immune response. JBC (2018) NGS Services
437 2018 Vikas Yadav, Sheng Sun, R. Blake Billmyre, Bhagya C. Thimmappa, Terrance Shea, Robert Lintner, Guus Bakkeren, Christina A. Cuomo, Joseph Heitman, Kaustuv Sanyal. RNAi is a critical determinant of centromere evolution in closely related fungi. PNAS (2018) NGS Services
436 2018
Shankha Subhra Chatterjee, Mayukh Biswas, Liberalis Debraj Boila, Debasis Banerjee and Amitava Sengupta. SMARCB1 Deficiency Integrates Epigenetic Signals to Oncogenic Gene Expression Program Maintenance in Human Acute Myeloid Leukemia. Molecular Cancer Resarch (2018).
MicroArray Services
435 2018
N. S. Subina, B. R. Thorat, Maria-Judith Gonsalves. Nitrification in intertidal sponge Cinachyrella cavernosa. Aquatic Ecology (2018)
NGS Services
434 2018 M. B. Mohamed Sathik, Lisha P. Luke, Anantharamanan Rajamani, Linu Kuruvilla, K. V. Sumesh, Molly Thomas. De novo transcriptome analysis of abiotic stress-responsive transcripts of Hevea brasiliensis. Molecular Breeding (2018). NGS Services
433 2018
Divya Vashisth, Ritesh Kumar, Shubhra Rastogi, Vikas Kumar Patel, Alok Kalra, Madan Mohan Gupta, Anil Kumar Gupta & Ajit Kumar Shasany. Transcriptome changes induced by abiotic stresses in Artemisia annua. Scientific Reports (2018).
NGS Services
432 2018 Pankaj Kumar Singh, Sayak Ganguli, Amita Pal. Screening and Identification of putative long non coding RNAs from transcriptome data of a high yielding blackgram (Vigna mungo), Cv. T9. Data in Brief. 2018 MicroArray Services
431 2018 Crystal A. Shanley, Marcela I. Henao-Tamayo, Chand Bipin, Raja Mugasimangalam, Deepshika Verma, Diane J. Ordway, Elizabeth M. Streicher, Ian M. Orme. Biology of clinical strains of Mycobacterium tuberculosis with varying levels of transmission. Tuberculosis Journal (2018).  MicroArray Services
430 2018 Mallika Lavania, Itu Singh, Ravindra P Turankar, Anuj Kumar Gupta, Madhvi Ahuja, Vinay Pathak, and Utpal Sengupta. Enriched whole genome sequencing identified compensatory mutations in the RNA polymerase gene of rifampicin-resistant Mycobacterium leprae strains. Infection and Drug Resistance (2018). NGS Services
429 2018 Lalit Kumar, Shamsuzzama, Pooja Jadiya, Rizwanul Haque, Shikha Shukla, Aamir Nazir. Functional Characterization of Novel Circular RNA Molecule, circzip-2 and Its Synthesizing Gene zip-2 in C. elegans Model of Parkinson’s Disease. Molecular Neurobiology. (2018) NGS Services
428 2018
Samantha Leong, Yue Zhao, Noyal M. Joseph, Natasha S. Hochberg, Sonali Sarkar, Jane Pleskunas, David Hom, Subitha Lakshminarayanan, C. Robert Horsburgh Jr., Gautam Roy, Jerrold J. Ellner, W. Evan Johnson, Padmini Salgame. Existing blood transcriptional classifiers accurately discriminate active tuberculosis from latent infection in individuals from south India. Tuberculosis. (2018)
NGS Services
427 2018 Singh, Garima; Roy, Jyoti; Rout, Pratiti; Mallick, Bibekanand. Genome-wide profiling of the PIWI-interacting RNA-mRNA regulatory networks in epithelial ovarian cancers. Plos One (2018) NGS Services
426 2017 Sanjeev Kumar Shukla, Shubhra Shukla, Rehan Khan, Anuj Ahuja, Lakshya Veer Singh, Nitin M. Kamble, Anupam Dhasmana, Naveen Sharma, Bipin Chand, Ajay Vir Singh. Pathway analysis of differentially expressed genes in Mycobacterium bovis challenged bovine macrophages (2017) Microarray Services
425 2017 Ella, Krishna Murthy Kandaswamy, Sumathy Inactivated chikungunya viruses (CHIKV) comprising an E1-K211E mutation. FPO (2017)

NGS Services
424 2017 K. Polavarapu, , A. Nalini, S. MK, S. Narayan Rao, V. Preethish-Kumar, D. Sekar, V. Sundar, S. Vengalil, S. Nashi, V. Krishnamurthy. A next generation sequencing based mutational analysis in Duchenne and Becker muscular dystrophy. Journal of the Neurological Sciences (2017). NGS Services
423 2017 Jyoti Kureel, Aijaz A. John, Ravi Prakash, Divya Singh. MiR 376c inhibits osteoblastogenesis by targeting Wnt3 and ARF-GEF-1 -facilitated augmentation of beta-catenin transactivation. Journal of Cellular Biochemistry (2017). Microarray Services
422 2017 Soumyadev Sarkar, Somnath Chakravorty, Avishek Mukherjee, Debanjana Bhattacharya, Semantee Bhattacharya, Ratan Gachhu. De novo RNA-Seq based transcriptome analysis of Papiliotrema laurentii strain RY1 under nitrogen starvation. Gene (2017). NGS Services
421 2017 Rathinasamy Karpagam, Kalimuthu Jawaharraja, Balasubramaniem Ashokkumar, Jayavel Sridhar, Perumal Varalakshmi, Unraveling the lipid and pigment biosynthesis in Coelastrella sp. M-60: Genomics-enabled transcript profiling. Algal Research (2018). NGS Services
420 2017 G Kiran Kumar Reddy, Y V Nancharaiah. Sustainable bioreduction of toxic levels of chromate in a denitrifying granular sludge reactor. Environmental Science and Pollution Research (2017). NGS Services
419 2017 P.A. Sutton, P.V. Jithesh1, R.P. Jones, J.P. Evans, D. Vimalachandran, H.Z. Malik, B.K. Park, C.E. Goldring, D.H. Palmer, N.R. Kitteringham. Exome sequencing of synchronously resected primary colorectal tumours and colorectal liver metastases to inform oncosurgical management. The Journal of Cancer Surgery (2017). NGS Services
418 2017 Poulomi Banerjee, Harshini Surendran, Kapil Bharti, Kaoru Morishita, Anurag Varshney, Rajarshi Pal. Long non-coding RNA RP11-380D23.2 drives distal-proximal patterning of the lung by regulating PITX2 expression. Stem Cells (2017). Microarray Services
417 2017 Deepika Singh, Debajyoti Kabiraj, Pragya Sharma, Hasnahana Chetia, Ponnala Vimal Mosahari, Kartik Neog, Utpal Bora. The mitochondrial genome of Muga silkworm (Antheraea assamensis) and its comparative analysis with other lepidopteran insects. PLoS ONE (2017). NGS Services
416 2017
Dillon F. Da Fonte, Christopher J. Martyniuk, Lei Xing, Adrian Pelin, Nicolas Corradi, 
Wei Hu & Vance L. Trudeau. Secretoneurin A regulates neurogenic and inflammatory transcriptional networks in goldfish (Carassius auratus) radial glia. Nature's Scientific Reports (2017).
NGS Services
415 2017 Jyoti Kode, Navin Khattry, Ashish Bakshi, Vasanti Amrutkar, Bhausaheb Bagal, Rohini Karandikar, Pallavi Rane, Nobutaka Fujii, Shubhada Chiplunkar. Study of stem cell homing & self-renewal marker gene profile of ex vivo expanded human CD34+ cells manipulated with a mixture of cytokines & stromal cell-derived factor 1. Indian Journal of Medical Research (2017). Microarray services
414 2017

Tarique Anwar, Bijoya Sen, Savera Aggarwal, Rhisita Nath, Ajay Katoch, Mohamed Aiyaz, Nirupma Trehanpati, Sanjeev Khosla, Gayatri Ramakrishnan. Differentially regulated gene expression in quiescence vs. senescence and identification of ARID5A as a quiescence associated marker. Journal of Cellular physiology (2017).

Microarray services
413 2017 Rama Chandra Laha, Surajit De Mandal, Lalhmanghai Ralte, Laldinfeli Ralte, Nachimuthu Senthil Kumar, Guruswami Gurusubramanian, Ramalingam Satishkumar, Raja Mugasimangalam and Nagesh Aswathnarayana Kuravadi. Correction to: Meta-barcoding in combination with palynological inference is a potent diagnostic marker for honey floral composition. AMB Express (2017) NGS Services
412 2017 Susheel Kumar Singh, Sunita Singh Dhawan. Analyzing trichomes and spatio-temporal expression of a cysteine protease gene Mucunain in Mucuna pruriens L. (DC). Protoplasma (2017). NGS Services
411 2017 Kuppusamy Sivasankaran, Pratheesh Mathew, Sekar Anand, Stanislaus Antony Ceasar, Soosaimanikam Mariapackiam, Savarimuthu Ignacimuthu. Complete mitochondrial genome sequence of fruit-piercing moth Eudocima phalonia (Linnaeus, 1763) (Lepidoptera: Noctuoidea). Genomics Data (2017). NGS Services
410 2017 Tapan Kumar Mondal, Hukam Chand Rawal, Kishor Gaikwad, Tilak Raj Sharma, Nagendra Kumar Singh. First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza. (2017). Nanopore Sequencing
409 2017 Udita Chandra, Aarti Yadav, Devanand Kumar, Swati Saha. Cell cycle stage-specific transcriptional activation of cyclins mediated by HAT2- dependant H4K10 acetylation of promoters in Leishmania donovani. PLoS Pathog (2017). Microarray services
408 2017
Gursharan Kaur, Vineet  Kumar, Amit  Arora, Ajay  Tomar, Ashish, Runa  Sur & Dipak Dutta. Affected energy metabolism under manganese stress governs cellular toxicity. Natures Scientific Reports (2017).
Microarray services
407 2017 Surender Kumar, BL Subbarao & Vipin Hallan. Molecular characterization of emaraviruses associated with Pigeonpea sterility mosaic disease. Natures Scientific Reports (2017). NGS Services
406 2017 Nizar Haddad, Noureddine Adjlane, Wahida Loucif-Ayad, Abhinandita Dash, S. Naganeeswaran, Balaji Rajashekar, Kosai Ali Ahmed Al-Nakeeb, Thomas Sicheritz-Pontén.  Mitochondrial genome of the North African Sahara Honeybee, Apis mellifera sahariensis (Hymenoptera: Apidae). Mitochondrial Dna Part B (2017). NGS Services
405 2017
Sumit Kumar, Rachapudi Venkata Sreeharsha, Shalini Mudalkar, Prasad M. Sarashetti & Attipalli Ramachandra Reddy. Molecular insights into photosynthesis and carbohydrate metabolism in Jatropha curcas grown under elevated CO2 using transcriptome sequencing and assembly. Natures Scientific Reports (2017).
NGS Services
404 2017 M. Sarvajith, G. Kiran Kumar Reddy, Y.V. Nancharaiah. Textile dye biodecolourization and ammonium removal over nitrite in aerobic granular sludge sequencing batch reactors. Journal of Hazardous Materials (2017). NGS Services
403 2017 Shumei Chia, Joo-Leng Low, Xiaoqian Zhang, Xue-Lin Kwang, Fui-Teen Chong, Ankur Sharma, Denis Bertrand, Shen Yon Toh, Hui-Sun Leong, Matan T. Thangavelu, Jacqueline S. G. Hwang, Kok-Hing Lim, Thakshayeni Skanthakumar, Hiang-Khoon Tan, Yan Su, Siang Hui Choo, Hannes Hentze, Iain B. H. Tan, Alexander Lezhava, Patrick Tan, Daniel S. W. Tan, Giridharan Periyasamy, Judice L. Y. Koh, N. Gopalakrishna Iyer & Ramanuj DasGupta. Phenotype-driven precision oncology as a guide for clinical decisions one patient at a time. Nature Communications (2017). Microarray services
402 2017
R. V. Sreedhar, P. Prasad, L. Prasanna Anjaneya Reddy, Ram  Rajasekharan & Malathi Srinivasan. Unravelling a stearidonic acid - rich triacylglycerol biosynthetic pathway in the developing seeds of Buglossoides arvensis: A transcriptomic landscape. Natures Scientific Reports (2017).
NGS Services
401 2017 Sana Parveen, Dhiviya Vedagiri, Hitha Gopalan Nair, Haripriya Parthasarathy, and Krishnan Harinivas Harshan. Unconventional MAPK-GSK-3β Pathway Behind Atypical Epithelial-Mesenchymal Transition In Hepatocellular Carcinoma. Natures Scientific Reports (2017). Microarray services
400 2017
Dhiru Bansal, Jahnavi Kulkarni, Kavana Nadahalli, Vairavan Lakshmanan, Srikar Krishna, Vidyanand Sasidharan, Jini Geo, Shilpa Dilipkumar, Renu Pasricha, Akash Gulyani, Srikala Raghavan and Dasaradhi Palakodeti.  Cytoplasmic poly (A)-binding protein critically regulates epidermal maintenance and turnover in the planarian Schmidtea mediterranea. The Company of Biologists Ltd|Development (2017).
NGS Services
399 2017 Abhishek Ojha, Deepak Kumar Sinha, A.P. Padmakumari, J.S. Bentur and Suresh Nair. Bacterial Community Structure in the Asian Rice Gall Midge Reveals a Varied Microbiome Rich in Proteobacteria. Nature Scientific Reports (2017) NGS Services
398 2017 Rajeswara Babu Mythri, N. Raghunath, Santosh C. Narwade, M.D. Pandareesh, K. Rajesh Sabitha, Mohamad Aiyaz, Bipin Chand, Manas Sule, Krittika Ghosh, Senthil Kumar, M.S. Bhagya, Soundarya Soundararajan, Phalguni Anand Alladi, Meera Purushottam,  Narayanappa Gayathri, Deepti D. Deobagkar, T. Rao Laxmi and Muchukunte Mukunda Srinivas Bharath. Manganese and 1-methyl-4-phenylpyridinium (MPP+) induced neurotoxicity indicate differences in morphological, electrophysiological and genome-wide alterations: Implications for idiopathic Parkinson's disease. Journal of Neurochemistry (2017). Microarray services
397 2017 Swati ShreePadhi, Souvick Roy, Madhabananda Kar, Arka Saha, Shomereeta Roy, Amit Adhya, Manas Baisakh, Birendranath Banerjee. Role of CDKN2A/p16 expression in the prognostication of oral squamous cell carcinoma. Oral Oncology (2017). Microarray Services
396 2017
Archita Srivastava, Shabnam Sircaik, Farha Husain, Edwina Thomas, Shivani Ror, Sumit Rastogi, Darakshan Alim, Priyanka Bapat, David R. Andes, Clarissa J. Nobile, Sneh L. Panwar. Distinct roles of the 7-transmembrane receptor protein Rta3 in regulating the asymmetric distribution of phosphatidylcholine across the plasma membrane and biofilm formation in Candida albicans. cellular microbiology (2017)
Microarray services
395 2017 Aditi Madan, Divesh Thimmaiya, Ari Franco-Cea, Mohammed Aiyaz, Prabodh Kumar, John C. Sparrow, Upendra Nongthomba.Transcriptome analysis of IFM-specific actin and myosin nulls in Drosophila melanogaster unravels lesion-specific expression blueprints across muscle mutations. j.gene (2017). Microarray services
394 2017 Gowthaman Govindarajan, Saumi Mathews, Karthik Srinivasan, Kim Ramasamy, Sundaresan Periasamy. Establishment of human retinal mitoscriptome gene expression signature for diabetic retinopathy using cadaver eyes. Mitochondrion (2017) Microarray services
393 2017
Sujay Paul, Yvette Ludena, Gretty K. Villena, Fengan Yu, David H. Sherman and Marcel Gutierrez-Correa. High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864. Standards in Genomic Sciences (2017).
NGS Services
392 2017 Balachandran Karpaga Raja Sundari, Srivani Telapolu, Bilikere S. Dwarakanath, Sadras. P. Thyagarajan. Cytotoxic and Antioxidant Effects in Various Tissue Extracts of Plumbago zeylanica: Implications for Anticancer Potential. Pharmacogn J (2017). NGS Services
391 2017 Vasudevan Prabhakaran1, Douglas A. Drevets, Govindan Ramajayam, Josephine J. Manoj, Michael P. Anderson, Jay S. Hanas4, Vedantam Rajshekhar, Anna Oommen, Helene Carabin.Comparison of monocyte gene expression among patients with neurocysticercosisassociated epilepsy, Idiopathic Epilepsy and idiopathic headaches in India. PLoS Negl Trop Dis (2017). Microarray services
390 2017 Sumanti Gupt, Anirban Bhar, Moniya Chatterjee, Amartya Ghosh, Sampa Das.Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack. PLoS ONE (2017). NGS Services
389 2017 Modhumita Ghosh Dasgupta, Veeramuthu Dharanishanthi. Identification of PEG-induced water stress responsive transcripts using co-expression network in Eucalyptus grandis. Gene (2017). Microarray services
388 2017
Deepti Sarkar, Ranjan Kumar Maji, Sayani Dey, Arijita Sarkar, Zhumur Ghosh, Pallob Kundu. Integrated miRNA and mRNA expression profiling reveals the response regulators of a susceptible tomato cultivar to early blight disease. DNA Research (2017). 
NGS Services
387 2017 Gajendra Singh Jeena, Shahnoor Fatima, Pragya Tripathi, Swati Upadhyay and Rakesh Kumar Shukla.Comparative transcriptome analysis of shoot and root tissue of Bacopa monnieri identifies potential genes related to triterpenoid saponin biosynthesis. BMC Genomics (2017). NGS Services
386 2017 Indraneel Mittra, Urmila Samant, Suvarna Sharma, Gorantla V Raghuram, Tannistha Saha, Pritishkumar Tidke, Namrata Pancholi, Deepika Gupta, Preeti Prasannan, Ashwini Gaikwad, Nilesh Gardi, Rohan Chaubal, Pawan Upadhyay, Kavita Pal, Bhagyeshri Rane, Alfina Shaikh, Sameer Salunkhe, Shilpee Dutt, Pradyumna K Mishra, Naveen K Khare, Naveen K Nair & Amit Dutt. Cell-free chromatin from dying cancer cells integrate into genomes of bystander healthy cells to induce DNA damage and inflammation. Cell Death Discovery (2017). Microarray Services
385 2017 Shailaja Hittalmani†Email author, H. B. Mahesh†Email author, Meghana Deepak Shirke, Hanamareddy Biradar, Govindareddy Uday, Y. R. Aruna, H. C. Lohithaswa and A. Mohanrao. Genome and Transcriptome sequence of Finger millet (Eleusine coracana (L.) Gaertn.) provides insights into drought tolerance and nutraceutical properties. BMC Genomics (2017). NGS Services
384 2017
Biswal D, Konhar R, Debnath M, Parameswaran S, Sundar D, Tandon P. Chloroplast Genome
Sequence Annotation of Dendrobium nobile (Asparagales: Orchidaceae), an Endangered Medicinal
Orchid from Northeast India. PLOS Currents Tree of Life (2017).
NGS Services
383 2017 M.K. Rasheeda, Vijaya Raghavan Rangamaran, Senthilkumar Srinivasan, Sendhil Kumar Ramaiah, Rajaprabhu Gunasekaran, Santhanakumar Jaypal, Dharani Gopal, Kirubagaran Ramalingam. Comparative profiling of microbial community of three economically important fishes reared in sea cages under tropical offshore environment. Marine Genomics (2017). NGS Services
382 2017 Krzysztof Krawczyk, Barbara Uszczyńska-Ratajczak, Alicja Majewska, Natasza Borodynko-Filas. DNA microarray-based detection and identification of bacterial and viral pathogens of maize. Journal of Plant Diseases and Protection(2017). Microarray services
381 2017 K. Sumathy, Bharathi Kulkarni, Ravi Kumar Gondu, Sampath Kumar Ponnuru, Nagaraju Bonguram, Rakesh Eligeti, Sindhuja Gadiyaram, Usha Praturi, Bhushan Chougule, Latha Karunakaran & Krishna M. Ella. Protective efficacy of Zika Vaccine in AG129 mouse model. natures Scientific report (2017). NGS Services
380 2017 Sujay Paul, Angel Zhang, Yvette Ludeña, Gretty K. Villena, Fengan Yu, David H. Sherman, Marcel Gutiérrez-Correa. Insights from the genome of a high alkaline cellulase producing Aspergillus fumigatus strain obtained from Peruvian Amazon rainforest.J.Jbiotech (2017). NGS Services
379 2017 Mohd Shariq, Sanjiveeni Dhamgaye, Remya Nair, Neha Goyal, Vaibhav Jain, Arnab Mukhopadhyay, Alok K. Mondal, Gauranga Mukhopadhyay & Rajendra Prasad. The global regulator Ncb2 escapes from the core promoter and impacts transcription in response to drug stress in Candida albicans. Scientific Reports (2017). Microarray services
378 2017
Chanchal Kumari, Tushar K. Dutta, Sonam Chaudhary, Prakash Banakar, Pradeep K. Papolu, Uma Rao. Molecular characterization of FMRFamide-like peptides in Meloidogyne graminicola and analysis of their knockdown effect on nematode infectivity. Gene (2017).
377 2017 Kavitha Velayudha Vimala Kumar, Nagesh Srikakulam, Priyavathi Padmanabhan and Gopal Pandi. Deciphering microRNAs and Their Associated Hairpin Precursors in a Non‐Model Plant, Abelmoschus esculentus. Non‐Coding RNA (2017). NGS Services
376 2017 Tarsizio Chikaonda, Nelson Nguluwe, Brian Barnett, Runa H. Gokhale, Robert Krysiak, Isaac Thengolose, Nora E. Rosenberg, Christopher Stanley, James Mpunga, Irving F. Hoffman, Mina Hosseinipour, Lesley Scott, Wendy Stevens. Performance of Xpert® MTB/RIF among tuberculosis outpatients in Lilongwe, Malawi. African Journal of Laboratory Medicine (2017). NGS Services
375 2017 Sakshi Dhingra Batra, Malobi Nandi, Kriti Sikri and Jaya Sivaswami Tyagi. Genome-wide expression profiling establishes novel modulatory roles of vitamin C in THP-1 human monocytic cell line. BMC Genomics (2017). Microarray services
374 2017 Veena Kochat, Zaffar Equbal, Prakash Baligar, Vikash Kumar, Madhulika Srivastava, Asok Mukhopadhyay. JMJD3 aids in reprogramming of bone marrow progenitor cells to hepatic phenotype through epigenetic activation of hepatic transcription factors.PLoS ONE, (2017). Microarray services
373 2017 Ravinder KumarAnil Kumar PinnakaBeena Krishnan.TfoI produced by Tepidimonas fonticaldi PL17, a moderate thermophilic bacterium, is an isoschizomer of MseI. Extremophiles(2017). NGS Services
372 2017 Aurelien Ducat, Ludivine Doridot, Rosamaria Calicchio, Celine Méhats, Jean-Luc Vilotte, Johann Castille, Sandrine Barbaux, Betty Couderc, Sébastien Jacques, Franck Letourneur, Christophe Buffat, Fabien Le Grand, Paul Laissue, Francisco Miralles & Daniel Vaiman.Endothelial cell dysfunction and cardiac hypertrophy in the STOX1 model of preeclampsia. Scientific Reports (2016). NGS Services
371 2017 Alivia Roy, Reetuparna Basak, Umesh Rai. De novo sequencing and comparative analysis of testicular transcriptome from different reproductive phases in freshwater spotted snakehead Channa punctatus. PLoS ONE (2017). NGS
370 2017 Deepika Singh, Debajyoti Kabiraj, Hasnahana Chetia, Pragya Sharma, Kartik Neog, Utpal Bora. Complete mitochondrial genome of golden silk producer Antheraea assamensis and its comparative analysis with other lepidopteran insects. bioRxiv Preprint (2017). NGS Services
369 2017
Atul Kumara, D. Jeya Sundara Sharmila, Sachidanand Singh. SVMRFE based approach for prediction of most discriminatory gene target for type II diabetes. Genomics Data (2017).
Microarray services
368 2017 Hasnahana Chetia, Debajyoti Kabiraj, Deepika Singh, Ponnala Vimal Mosahari, Suradip Das, Pragya Sharma, Kartik Neog, Swagata Sharma, P. Jayaprakash, Utpal Bora. De novo transcriptome of the muga silkworm, Antheraea assamensis (Helfer). Gene Journal (2017). NGS Services
367 2017 Ahlfors, Jan-eric, El-ayoubi, Rouwayda. METHODS FOR REPROGRAMMING CELLS AND USES THEREOF.  United States Patent Application 20170029783 (2017). Microarray services
366 2017 Awanti Sambarey, Abhinandan Devaprasad, Priyanka Baloni, Madhulika Mishra, Abhilash Mohan, Priyanka Tyagi, Amit Singh,JS Akshata, Razia Sultana, Shashidhar Buggi and Nagasuma Chandra. Meta-analysis of host response networks identifies a common core in tuberculosis. npj Systems Biology and Applications (2017). Microarray services
365 2017 Anirban Kundua, Sujay Paula, Avishek Dey, Amita Pal. High throughput sequencing reveals modulation of microRNAs in Vigna mungo upon Mungbean Yellow Mosaic India Virus inoculation highlighting stress regulation. Plant Science Journal (2017). NGS
364 2017
Anirban Roychowdhury, Sudip Samadder, Pijush Das, Sapan Mandloi, Sankar Addya,
Chandraditya Chakraborty, Partha Sarathi Basud, Ranajit Mondal, Anup Roy, Saikat Chakrabarti,
Susanta Roychoudhury, Chinmay Kumar Panda.Integrative genomic and network analysis identified novel genes associated with the development of advanced cervical squamous cell carcinoma. Biochimica et Biophysica Acta (BBA) - General Subjects (2016).
Microarray services
363 2017 R.P. Singh, C.M. Shafeeque, S.K. Sharma, R. Singh, J. Mohan, K.V.H. Sastry, V.K. Saxena, P.A. Azeez. Chicken sperm transcriptome profiling by microarray analysis. Genome (2016). Microarray services
362 2017
Jyoti Roy, Arijita Sarkar, Sibun Parida, Zhumur Ghosh and Bibekanand Mallick.  Small RNA sequencing revealed dysregulated piRNAs in Alzheimer's disease and their probable role in pathogenesis. Mol. BioSyst (2017).
361 2017 Pooja Makwana, Appukuttan Nair R. Pradeep, Shambhavi P. Hungund, Kangaram M. Ponnuvel, Kanika Trivedy. The dipteran parasitoid Exorista bombycis induces pro- and anti-oxidative reactions in the silkworm Bombyx mori: Enzymatic and genetic analysis. Archives of Insect Biochemistry and Physiology (2017). Microarray services
360 2017 Mulaka Maruthi, Dipti Singh, Segireddy Rameswara Reddy, Babu S Mastan, Satish Mishra and Kota Arun Kumar.  Modulation of host cell SUMOylation facilitates efficient development of Plasmodium berghei and Toxoplasma gondii. cellular microbiology(2017). Microarray services
359 2017 Faisal Mohammed Abdul Al-Nihmi,Surendra Kumar Kolli, Segireddy Rameswara Reddy, Babu S. Mastan, Jyothi Togiri, Mulaka Maruthi, Roshni Gupta, Puran Singh Sijwali, Satish Mishra & Kota Arun Kumar.  A Novel and Conserved Plasmodium Sporozoite Membrane Protein SPELD is Required for Maturation of Exo-erythrocytic Forms.  Scientific Reports (2017). Microarray services
358 2017 Awanti Sambarey, Abhinandan Devaprasad, Abhilash Mohan, Asma Ahmed, Soumya Nayak, Soumya Swaminathan, George D’Souza, Anto Jesuraj, Chirag Dhar, Subash Babu, Annapurna Vykarnam, Nagasuma Chandra.Unbiased Identification of Blood-based Biomarkers for Pulmonary Tuberculosis by Modeling and Mining Molecular Interaction Networks. EBioMedicine, 2016. NGS
357 2017 Manas Ranjan Sahoo, Swati Gaikwad, Deepak Khuperkar, Maitreyi Ashok, Mary Helen, Santosh Kumar Yadav, Aditi Singh, Indrasen Magre, Prachi Deshmukh, Supriya Dhanvijay, Pabitra Kumar Sahoo, Yogendra Ramtirtha, Mallur Srivatsan Madhusudhan, Pananghat Gayathri, Vasudevan Seshadri, Jomon Joseph. Nup358 binds to AGO proteins through its SUMO‐interacting motifs and promotes the association of target mRNA with miRISC. EMBO reports, 2016.Vol 35 Issue 24. NGS, Seq QC
356 2016 Hickman, Oliver J, Smith, Richard A, Dasgupta, Prokar, Rao, Sudha Narayana, Nayak, Soumya, Sreenivasan, Shubha, Vyakarnam, Annapurna, Galustian, Christine, Expression of two WFDC1/ps20 isoforms in prostate stromal cells induces paracrine apoptosis through regulation of PTGS2/COX-2, British Journal Of Cancer, Volume 114, Page 1235, 10.1038/bjc.2016.91 MicroArray Services
355 2016 Choubey, A. & Rajam, M.V. (2016) Transcriptome response and developmental implications of RNAi-mediated ODC knockdown in tobacco. Funct Integr Genomics. pp 1-14. Microarray services
354 2016 Tellapragada C, Kamthan A, Shaw T, KEV, KumarS, Bhat V, et al. (2016) Unravelling the Molecular Epidemiology and Genetic Diversity among Burkholderia pseudomallei Isolates from South India Using Multi Locus Sequence Typing. PLoS ONE 11(12):e0168331.doi:10.1371/journal.pone.0168331 NGS
353 2016 Pandey SS, Patnana PK, Lomada SK, Tomar A, Chatterjee S (2016) Co-regulation of Iron Metabolism and Virulence Associated Functions by Iron and XibR, a Novel Iron Binding Transcription Factor, in the Plant Pathogen Xanthomonas. PLoS Pathog 12(11): e1006019. doi:10.1371 /journal. ppat.1006019. Microarray services
352 2016 Jees Sebastian, Sharmada Swaminath, Rashmi Ravindran Nair, Kishor Jakkala, Atul Pradhan and Parthasarathi Ajitkumar. (2016) De Novo Emergence of Genetically Resistant Mutants of Mycobacterium tuberculosis from the Persistence Phase Cells formed against Antituberculosis Drugs In Vitro. Antimicrob. Agents Chemother. AAC.01343-16. NGS
351 2016 Megha H. Sampangi-Ramaiah, Kundapura V. Ravishankar, Ajitha Rekha, Kodathalu Seetharamaiah Shivashankara, laxman R. Hunashikatti. A Contig-Based Computational Prediction of Conserved miRNAs and Their Probable Role in Regulation of Cuticular Wax Biosynthesis in Banana. Plant Mol Biol Rep (2016). miRNA
350 2016 Deepak Kumar, Saptarshi Hazra, Riddhi Datta & Sharmila Chattopadhyay.  Transcriptome analysis of Arabidopsis mutants suggests a crosstalk between ABA, ethylene and GSH against combined cold and osmotic stress.  Scientific Reports 6, Article number: 36867; (2016). Microarray services
349 2016
Das P, Bansal A, Rao SN, Deodhar K, Mahantshetty U, Shrivastava SK, et al. (2016) Somatic Variations in Cervical Cancers in Indian Patients.PLoS ONE 11(11):e0165878.
348 2016
Muthuswamy M, Uma S, Backiyarani S, Saraswathi MS and Chandrasekar A. Transcriptomic Changes of Drought-Tolerant and Sensitive Banana Cultivars Exposed to Drought Stress. Front. Plant Sci (2016). 7:1609
347 2016 Rohini Bhat Valekunja, Vikramshankar Kamakoti, Anitha Peter, Shamprasad Phadnis, Shalini Prasad and Vinay J Nagaraj. The Detection of Papaya Ringspot Virus Coat Protein Using an Electrochemical Immunosensor.  Analytical Methods (2016). NGS
346 2016 Jayaraman Suriya,Mootapally Chandra Shekar, Neelam Mustakali Nathani,Thangaiyan Suganya,Subramanian Bharathiraja,Muthukalingan Krishnan. Assessment of bacterial community composition in response to uranium levels in sediment samples of sacred Cauvery River. Applied Microbiology and Biotechnology (2016). NGS
345 2016
Anirban Kundu, Sujay Paul, Amita Pal and Genotypic Technology. Mungbean Yellow Mosaic India Virus (MYMIV)-infection, Small RNA Library Construction and Deep Sequencing for MicroRNA Identification in Vigna mungo. bio-protocol (2016).
344 2016 Vandana Sharma, Rajaram Purushotham and Rupinder Kaur. The phosphoinositide 3-kinase regulates retrograde trafficking of the iron permease CgFtr1 and iron homeostasis in Candida glabrata. The Journal of Biological Chemistry (2016) NGS
343 2016 Ruchishree Konhar, Devendra Kumar Biswal, Manish Debnath, Sriram Parameswaran, Durai Sundar, Pramod Tandon. Complete Chloroplast Genome Sequence of Dendrobium nobile from Northeastern India. American Society for Microbiology - Genome Announcements; vol 4 (5) (2016). NGS
342 2016 Akansha Pandey, Vishakha Swarnkar, Tushar Pandey, Piush Srivastava, Sanjeev Kanojiya, Dipak Kumar Mishra & Vineeta Tripathi. Transcriptome and Metabolite analysis reveal candidate genes of the cardiac glycoside biosynthetic pathway from Calotropis procera. NATURE Scientific Reports 6, Article number: 34464 (2016) NGS, Seq QC
341 2016 Pon Arunachalam Boopathi, Amit Kumar Subudhi, Sheetal Middha, Jyoti Acharya, Raja Chinnadurai Mugasimangalam, Sanjay Kumar Kochar, Dhanpat Kumar Kochar, Ashis Das. Design, Construction and Validation of a Plasmodium vivax microarray for the transcriptome profiling of clinical isolates. Acta Tropica (2016) Microarray services
340 2016 Srilatha Jasty, Subramanian Krishnakumar. Profiling of DNA and histone methylation reveals epigenetic-based regulation of gene expression during retinal differentiation of Stem/progenitor cells isolated from the ciliary pigment epithelium of Human cadaveric eyes. Brain Research (2016) Microarray services
339 2016 Anirban Roychowdhury, Sudip Samadder, Pijush Das, Sapan Mandloi, Sankar Addya, Chandraditya Chakraborty, Partha Sarathi Basu, Ranajit Mondal, Anup Roy, Saikat Chakrabarti, Susanta Roychoudhury, Chinmay Kumar Panda. Integrative genomic and network analysis identified novel genes associated with the development of advanced cervical squamous cell carcinoma. Biochimica et Biophysica Acta (BBA) - General Subjects (2016). Microarray
338 2016
Ansari MA, Fatima Z, Hameed S. Anticandidal Effect and Mechanisms of Monoterpenoid, Perillyl Alcohol against Candida albicans. PLoS ONE (2016);Vol 11(9): e0162465. doi:10.1371/journal.pone.0162465
Microarray services
337 2016 Devika Ranade, Shivsmriti Koul, Joyce Thompson, Kumar Brajesh Prasad, Kundan Sengupta. Chromosomal aneuploidies induced upon Lamin B2 depletion are mislocalized in the interphase nucleus. Chromosoma (2016).DOI 10.1007/s00412-016-0580-y Microarray services
336 2016 Kaliyappan R, Viswanathan S, Suthanthiram B, Subbaraya U, Marimuthu Somasundram S, et al. (2016) Evolutionary Expansion of WRKY Gene Family in Banana and Its Expression Profile during the Infection of Root Lesion Nematode, Pratylenchus coffeae. PLoS ONE 11(9): e0162013. doi: 10.1371/journal.pone.0162013   NGS
335 2016 Atish Ray, Asani Bhaduri, Nidhi Srivastava, Shibnath Mazumder. Identification of novel signature genes attesting arsenic-induced immune alterations in adult zebrafish (Danio rerio). Journal of Hazardous Materials(2017);Volume 321, Pages 121–131 Microarray services
334 2016
Ganesan S, Alex AA, Chendamarai E, Balasundaram N, Palani HK, David S, Kulkarni U, Aiyaz M, Mugasimangalam R, Korula A, Abraham A, Srivastava A, Padua RA, Chomienne C, George B, Balasubramanian P, Mathews V. Rationale and efficacy of proteasome inhibitor combined with arsenic trioxide in the treatment of acute promyelocytic leukemia. Leukemia. 2016 Aug, Vol 18. doi: 10.1038/leu.2016.227.
Microarray services
333 2016

Snehal D. Karpe, Rikesh Jain, Axel Brockmann and R. Sowdhamini.Identification of complete repertoire of Apis florea odorant receptors reveals complex orthologous relationships with Apis mellifera. Genome Biology and Evolution,2016;doi:10.1093/gbe/evw202

332 2016

Haoxin Li, Andrew Cowie, John A. Johnson, Duncan Webster, Christopher J. Martyniuk and Christopher A. Gray. Determining the mode of action of anti-mycobacterial C17 diyne natural products using expression profiling: evidence for fatty acid biosynthesis inhibition. BMC Genomics (2016) 17:621. DOI 10.1186/s12864-016-2949-y

Microarray services
331 2016

Sujay Paul, Yolanda Cortez,Nadia Vera,Gretty K. Villena and Marcel Gutiérrez-Correa. BBJ, 15(1): 1-11, 2016; Article no.BBJ.27519

330 2016

Pallavi Kakade, Parag Sadhale, Kaustuv Sanyal & Valakunja Nagaraja. ZCF32, a fungus specific Zn(II)2 Cys6 transcription factor, is a repressor of the biofilm development in the human pathogen Candida albicans. Scientific Reports 6, Article number: 31124 (2016) doi:10.1038/srep31124.

Microarray services
329 2016

Cornelia Braicu, Sonia Selicean, Roxana Cojocneanu-Petric, Raduly Lajos, Ovidiu Balacescu, Ionelia Taranu, Daniela Eliza Marin, Monica Motiu, Ancuta Jurj, Patriciu Achimas-Cadariu and Ioana Berindan-Neagoe.Evaluation of cellular and molecular impact of zearalenone and Escherichia coli co-exposure on IPEC-1 cells using microarray technology.BMC Genomics (2016);17:576. DOI: 10.1186/s12864-016-2830-z

Microarray services
328 2016

Josephy D. DiBattista, Xin Wang, Pablo Saenz-Agudelo, Marek J. Piatek, Manuel Aranda, Michael L Berumen.Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics. Molecular Ecology Resources (2016); DOI: 10.1111/1755-0998.12588

327 2016

Ashok Ganapathy, Sridhar Jayavel and Sivakumar Natesan. Draft Genome Sequence of Carotenoid Producing Yellow Pigmented Planococcus maritimus MKU009.Journal of Genomics 2016, Vol. 4: 23-25. doi: 10.7150/jgen.15533

326 2016

Vairavan Lakshmanan, Dhiru Bansal, Jahnavi Kulkarni, Deepak Poduval, Srikar Krishna, Vidyanand Sasidharan, Praveen Anand, Aswin Seshasayee and Dasaradhi Palakodeti. Genome-wide analysis of polyadenylation events in Schmidtea mediterranea.G3: Genes|Genomes|Genetics (2016) doi:10.1534/g3.116.031120

325 2016

Alok Kumar Singh, Rajeev Kumar Pandey, Chandrima Shaha & Rentala Madhubala. MicroRNA expression profiling of Leishmania donovani-infected host cells uncovers the regulatory role of MIR30A-3p in host autophagy. Autophagy (2016)

324 2016

Amit Kumar Subudhi, P.A. Boopathi, Sheetal Middha, Jyoti Acharya, Sudha Narayana Rao, Raja C. Mugasimangalam, Paramendra Sirohi, Sanjay K. Kochar, Dhanpat K. Kochar, Ashis Das. A cross strain Plasmodium falciparum microarray optimized for the transcriptome analysis of Plasmodium falciparum patient derived isolates.Genomics Data (2016); Vol 9, Pg 118–125

Transcriptome profiling, NGS
323 2016

Chakrapani, V., Patra, S.K., Mohapatra, S.D. et al. Comparative transcriptomic profiling of larvae and post-larvae of Macrobrachium rosenbergii in response to metamorphosis and salinity exposure. Genes Genom (2016). doi:10.1007/s13258-016-0452-0

322 2016

Moiz A. Ansari1, Zeeshan Fatima1, Saif Hameed. Mechanistic insights into the mode of action of anticandidal sesamol. Microbial Pathogenesis (2016); vol 98, Pg 140-148

321 2016

Sujay Paul, Yolanda Cortez, Nadia Vera, Gretty K. Villena, Marcel Gutiérrez-Correa. Metagenomic analysis of microbial community of an Amazonian geothermal spring in Peru. Genomics Data (2016); Vol 9, pg 63-66


320 2016

Jatoth Balsingh, Surabhi Radhakrishna, Kandasamy Ulaganathan.Draft Genome Sequence of Bacillus pumilus ku-bf1 Isolated from the Gut Contents of Wood Boring Mesomorphus sp. Front. Microbiol,2016 June, doi: 10.3389/fmicb.2016.01037

319 2016

Shilpa Sharma, Gurudutta Gangenahalli. Gene Expression Profiling of Human c-Kit Mutant D816V. Journal of Cancer Therapy, 2016 June,Vol 7,Pg 439-454

318 2016

Mahendra Gaur, Aradhana Das, Rajesh Kumar Sahoo, Sujata Mohanty, Raj Kumar Joshi, Enketeswara Subudhi. Comparative transcriptome analysis of ginger variety Suprabha from two different agro-climatic zones of Odisha.Genomics Data, 2016 September, Vol 9, Pages 42–43

317 2016

Mahendra Gaur,Aradhana Das,Rajesh Kumar Sahoo,Basudeba Kar,Sanghamitra Nayak,Enketeswara Subudhi.De Novo transcriptome assembly of Zingiber officinale cv. Suruchi of Odisha.Genomics Data, 2016 September,Vol 9,Pages 87–88

316 2016

Naveen Prasad, Shreeharsha Tarikere, Dhanashree Khanale, Farhat Habib, LS Shashidhara.A comparative genomic analysis of targets of Hox protein Ultrabithorax amongst distant insect species. Scientific Reports, 2016, vol 6, Article number: 27885.doi:10.1038/srep27885



315 2016

Nilakshi Samaranayake, Sumadhya D. FernandoEmail author, Nilaksha F. Neththikumara, Chaturaka Rodrigo, Nadira D. Karunaweera and Vajira H. W. Dissanayake.Association of HLA class I and II genes with cutaneous leishmaniasis: a case control study from Sri Lanka and a systematic review.BMC Infectious Diseases, (2016) 16:292.DOI 10.1186/s12879-016-1626-8

314 2016 Aarti Yadav, Udita Chandra & Swati Saha.  Histone acetyltransferase HAT4 modulates navigation across G2/M and re-entry into G1 in Leishmania donovani.  Nature Publishing Group. Scientific Reports, 2016 June, Vol 6 NGS
313 2016

S. Dharshinia, M. Chakravarthia, J.Ashwin Narayana, V.M. Manoj, M. Naveenarani, Ravinder Kumar, Minturam Meena, Bakshi Ram, C. Appunu. De novo sequencing and transcriptome analysis of a low temperature tolerant Saccharum spontaneum clone IND 00-1037. Journal of Biotechnology, 2016 August, Vol 231,Pg 280–294.


312 2016

Anirvan Chatterjee, Farhan Ali, Disha Bange, Kiran Kondabagil. solation and complete genome sequencing of Mimivirus bombay, a Giant Virus in sewage of Mumbai, India. Genomics Data, 2016 September, Vol 9,Pg 1–3


311 2016 Aleksei Krasnov, Hooman Moghadam, Thomas Larsson, Sergey Afanasyev, Turid Mørkøre. Gene expression profiling in melanised sites of Atlantic salmon fillets. Fish & Shellfish Immunology, 2016 August, Vol 55, Pg 56-63 NGS
310 2016

Satendra Kumar Mangrauthia, Surekha Agarwal, B. Sailaja, N. Sarla, S. R. Voleti. Transcriptome Analysis of Oryza sativa (Rice) Seed Germination at High Temperature Shows Dynamics of Genome Expression Associated with Hormones Signalling and Abiotic Stress Pathways. Tropical Plant Biol. (2016). doi:10.1007/s12042-016-9170-7

309 2016

Kushal N. Gohil, Priya S. Neurgaonkar , Aditi Paranjpe , Syed G. Dastager, Mahesh S. Dharne. Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions. Elsevier, 2016 August, Vol 8, Pg. 72-76

308 2016

Kamaldeen Nasrin Nisha, Jayavel Sridhar, Perumal Varalakshmi and Balasubramaniem Ashokkumar Draft Genome Sequence of Paracoccus sp. MKU1, a New Bacterial Strain Isolated from an Industrial Effluent with Potential for Bioremediation. Journal of Genomics 2016, Vol. 4:13-15. doi: 10.7150/jgen.14847

307 2016

Rathan S. Jadav, Dharmika Kumara, Natasha Buwa, Shubhra Gangulia, Sitalakshmi R. Thampattya, Nagaraj Balasubramanian, Rashna Bhandaria. Deletion of inositol hexakisphosphate kinase 1 (IP6K1) reduces cell migration and invasion, conferring protection from aerodigestive tract carcinoma in mice. Elsevier, 2016 August, Vol 28(8), Pg 1124–1136

Microarray services
306 2016

Garima Sharma, Divya Tej Sowpati, Prakruti Singh, Mehak Zahoor Khan, Rakesh Ganji, Sandeep Upadhyay, Sharmistha Banerjee, Vinay Kumar Nandicoori & Sanjeev Khosla. Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection. Scientific Reports 6, Article number: 25006 (2016) doi:10.1038/srep25006

305 2016

Oliver J Hickman, Richard A Smith, Prokar Dasgupta, Sudha Narayana Rao, Soumya Nayak, Shubha Sreenivasan, Annapurna Vyakarnam and Christine Galustian. Expression of two WFDC1/ps20 isoforms in prostate stromal cells induces paracrine apoptosis through regulation of PTGS2/COX-2. British Journal of Cancer 114, 1235-1242 (24 May 2016) | doi:10.1038/bjc.2016.91

304 2016 Mohan A, Singh RS, Kumari M, Garg D, Upadhyay A, Ecelbarger CM, et al. (2016) Urinary Exosomal microRNA-451-5p Is a Potential Early Biomarker of Diabetic Nephropathy in Rats. PLoS ONE 11(4): e0154055. doi:10.1371/journal. pone.0154055 NGS
303 2016

Kushal N. Gohil, Priya S. Neurgaonkar, Aditi Paranjpe, Syed G. Dastager , Mahesh S. Dharne. Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions, Elsevier. 2016 June; Vol 8: 72–76.

302 2016

Manjima chatterjee, Upasana Mukherjee, Narmada Ashok, Raja Das, Suvrajit Das and Radha Saraswathy. MCP polymorphism, environmental risk factors and asthma - a hospital based study in vellore, Int J Pharm Bio Sci 2016 April; 7(2): (B) 598 – 605.

301 2016 Hittalmani S, Mahesh HB, Mahadevaiah C, Prasannakumar MK. De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways. BMC Genomics. 2016;17(1):271. NGS
300 2016 Haddad NJ, Batainh A, Saini D, et al. Evaluation of Apis mellifera syriaca Levant region honeybee conservation using comparative genome hybridization. Genetica. 2016; Microarray
299 2016
Nair RG, Kaur G, Khatri I, Singh NK, Maurya SK, et al. (2016) Genome Mining and Comparative Genomic Analysis of Five Coagulase-Negative Staphylococci (CNS) Isolated from Human Colon and Gall Bladder. J Data Mining Genomics Proteomics 7: 192. doi:10.4172/2153-0602.1000192
298 2016 Saxena S, Saxena VK, Tomar S, Sapcota D, Gonmei G. Characterization of caecum and crop microbiota of Indian indigenous chicken targeting multiple hypervariable regions within 16s rRNA gene. Br Poult Sci. 2016; NGS
297 2016 Balachander GM, Balaji SA, Rangarajan A, Chatterjee K. Enhanced Metastatic Potential in a 3D Tissue Scaffold toward a Comprehensive in Vitro Model for Breast Cancer Metastasis. ACS Appl Mater Interfaces. 2015;7(50):27810-22. Microarray
296 2016 Kushwaha P, Khedgikar V, Sharma D, et al. MicroRNA 874-3p Exerts Skeletal Anabolic Effects Epigenetically during Weaning by Suppressing Hdac1 Expression. J Biol Chem. 2016;291(8):3959-66. Microarray
295 2016

Manisha P, Mamta T, Umesh R, Soma M G. Tracing the evolutionary lineage of pattern recognition receptor homologues in vertebrates: An insight into reptilian immunity via de novo sequencing of the wall lizard splenic transcriptome. j.vetimm.2016;

294 2016 Forero DA, Wonkam A, Wang W, Mugasimangalam R, et al. Current needs for human and medical genomics research infrastructure in low and middle income countries. J Med Genet. 2016; NGS
293 2016 Gupta KR, Baloni P, Indi SS, Chatterji D. Regulation of growth, cell shape, cell division and gene expression by second messengers (p)ppGpp and c-di-GMP in Mycobacterium smegmatis. J Bacteriol. 2016; Microarray
292 2016 Sayak Ganguli, Avishek Dey, Rahul Banik, Anirban Kundu, Amita Pal, Analyses of MYMIV-induced transcriptome in Vigna mungo as revealed by next generation sequencing, Genomics Data (2016) NGS
291 2016 Qayyum MZ, Dey D, Sen R. J Biol Chem. Transcription elongation factor NusA is a general antagonist of Rho-dependent termination in Escherichia coli. jbc.M115.701268. 2016 Feb 12. Microarray
290 2016 Blessia TF, Singh S, Vennila JJ. Unwinding the Novel Genes Involved in the Differentiation of Embryonic Stem Cells into Insulin-Producing Cells: A Network-Based Approach. Interdiscip Sci. 2016; Microarray
289 2016 Chatterjee G, Sankaranarayanan SR, Guin K, et al. Repeat-Associated Fission Yeast-Like Regional Centromeres in the Ascomycetous Budding Yeast Candida tropicalis. PLoS Genet. 2016;12(2):e1005839. Microarray
288 2016

Govindaraj L, Gupta T, Esvaran VG, Awasthi AK, Ponnuvel KM. Genome-wide identification, characterization of sugar transporter genes in the silkworm Bombyx mori and role in Bombyx mori nucleopolyhedrovirus (BmNPV) infection. Gene. 2016;579(2):162-71.

287 2016 Archana Singh, Enketeswara Subudhi, Rajesh Kumar Sahoo, Mahendra Gaur, Investigation of the microbial community in the Odisha hot spring cluster based on the cultivation independent approach, Genomics Data (2016) NGS
286 2016 Ducat A, Doridot L, Calicchio R, et al. Endothelial cell dysfunction and cardiac hypertrophy in the STOX1 model of preeclampsia. Sci Rep. 2016;6:19196. NGS
285 2015 Lekha G, Gupta T, Awasthi AK, Murthy GN, Trivedy K, Ponnuvel KM. Genome wide microarray based expression profiles associated with BmNPV resistance and susceptibility in Indian silkworm races of Bombyx mori. Genomics. 2015;106(6):393-403.
284 2015 Andreuzza S, Nishal B, Singh A, Siddiqi I. The Chromatin Protein DUET/MMD1 Controls Expression of the Meiotic Gene TDM1 during Male Meiosis in Arabidopsis. PLoS Genet. 2015;11(9):e1005396. Microarray
283 2015 Sundaresan S, Philosoph-hadas S, Riov J, Mugasimangalam R, Kuravadi NA, Kochanek B, Salim S, Tucker ML and Meir S(2015) De novo transcriptome sequencing and development of abscission zone-specific microarray as a new molecular tool for analysis of tomato organ abscission. Front. Plant Sci. 6:1258. doi:10.3389/fpls.2015.01258 Microarray
282 2015 Kim J, Sundaresan S, Philosoph-hadas S, Yang R, Meir S, Tucker ML. Examination of the Abscission-Associated Transcriptomes for Soybean, Tomato, and Arabidopsis Highlights the Conserved Biosynthesis of an Extensible Extracellular Matrix and Boundary Layer. Front Plant Sci. 2015;6:1109. Microarray
281 2015 Archana S, Enketeswara S, Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing, (2015), doi:10.1016/j.gdata.2015.12.004 NGS
280 2015 Mohan A, Bhosle A, Chandra N. 2015. Complete genome sequences of an Escherichia coli laboratory strain and trimethoprim-resistant (TMP32XR) mutant strains. Genome Announc 3(6):e01434-15. doi:10.1128/genomeA.01434-15. NGS
279 2015 Sathishkumar Y, Krishnaraj C, Rajagopal K, Sen D, Lee YS. High throughput de novo RNA sequencing elucidates novel responses in Penicillium chrysogenum under microgravity. Bioprocess Biosyst Eng. 2015; NGS
278 2015
Mondal TK, Ganie SA, Debnath AB (2015) Identification of Novel and Conserved miRNAs from
Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice. PLoS ONE 10(10): e0140675. doi:10.1371/journal.pone.0140675
277 2015 Kumar A, Henrissat B, Arvas M, Syed MF, Thieme N, Benz JP, et al. (2015) De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulisStrain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster. PLoS ONE 10(10): e0140398. doi:10.1371/journal.pone.0140398 NGS
276 2015
Ravishankar, K.V., Megha, H.S., Rekha, A., Khadke, G.N., Veerraju, C.H., Insights into Musa balbisiana and Musa acuminata species divergence and development of genic microsatellites by transcriptomics approach, (2015), doi: 10.1016/j.plgene.2015.09.007
275 2015 Chakka D, Gudla R, Madikonda AK, et al. The organophosphate degradation (opd) island borne esterase induced metabolic diversion in E. coli and its influence on p-nitrophenol degradation. J Biol Chem. 2015; Microarray
274 2015 Desler C, Frederiksen JH, Angleys M, et al. Increased deoxythymidine triphosphate levels is a feature of relative cognitive decline. Mitochondrion. 2015; NGS
273 2015 Chhakchhuak L, De mandal S, Gurusubramanian G, et al. Complete mitochondrial genome of the Himalayan honey bee, Apis laboriosa. Mitochondrial DNA. 2015;:1-2. NGS
272 2015 Sahoo RK, Subudhi E , Kumar M. Investigation of bacterial diversity of hot springs of Odisha, India. Genomics Data 2015. NGS
271 2015 Pathak BR, Breed AA, Apte S, Acharya K, Mahale SD. Cysteine-rich secretory protein 3 plays a role in prostate cancer cell invasion and affects expression of PSA and ANXA1. Mol Cell Biochem. 2015; Microarray
270 2015 Chatterjee S, Alampalli SV, Nageshan RK, Chettiar ST, Joshi S, Tatu US. Draft genome of a commonly misdiagnosed multidrug resistant pathogen Candida auris. BMC Genomics. 2015;16(1):686. NGS, Seq QC
269 2015 Halder P, Kumar R, Jana K, et al. Gene expression profiling of Mycobacterium tuberculosis Lipoarabinomannan-treated macrophages: A role of the Bcl-2 family member A1 in inhibition of apoptosis in mycobacteria-infected macrophages. IUBMB Life. 2015; Microarray
268 2015 Garg A, Agrawal L, Misra RC, Sharma S, Ghosh S. Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes. BMC Genomics. 2015;16:659. NGS, Seq QC
267 2015 M. Muthusamy, S. Uma, S. Backiyarani, M. S. Saraswathi.Genome-wide screening for novel, drought stress-responsive long non-coding RNAs in drought-stressed leaf transcriptome of drought-tolerant and -susceptible banana (Musa spp) cultivars using Illumina high-throughput sequencing. Plant Biotechnology Reports 2015. NGS
266 2015 Kamala, S.; Makeshkumar, T. Transcriptome profiling of in vitro lines propagated from corm bud tip of elephant foot yam (Amorphophallus paeoniifolius) approves complete potyviruses elimination. European Journal of Plant Pathology 2015. NGS
265 2015

Meir, S., Sundaresan, S., Riov, J., Agarwal, I., & Philosoph-Hadas, S. (2015). Role of auxin depletion in abscission control. Stewart Postharvest Review,11(2), 1-15.

264 2015 Srivastava PL, Daramwar PP, Krithika R, Pandreka A, Shankar SS, Thulasiram HV. Functional Characterization of Novel Sesquiterpene Synthases from Indian Sandalwood, Santalum album. Sci Rep. 2015;5:10095. NGS, Molecular biology
263 2015 Subudhi AK, Boopathi PA, Pandey I, et al. Disease specific modules and hub genes for intervention strategies: A co-expression network based approach for Plasmodium falciparum clinical isolates. Infect Genet Evol. 2015;35:96-108. Array design
262 2015 Mathan kumar R, Kaur G, Kumar N, et al. Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a novel halotolerant bacterium isolated from marine sediment. Int J Syst Evol Microbiol. 2015; NGS
261 2015 Chhakchhuak L, De mandal S, Gurusubramanian G, Nachimuthu SK. The near complete mitochondrial genome of the Giant honey bee, Apis dorsata (Hymenoptera: Apidae: Apinae) and its phylogenetic status. Mitochondrial DNA. 2015;:1-2. NGS
260 2015 Sahu DK, Panda SP, Meher PK, et al. Construction, De-Novo Assembly and Analysis of Transcriptome for Identification of Reproduction-Related Genes and Pathways from Rohu, Labeo rohita (Hamilton). PLoS ONE. 2015;10(7):e0132450. SeqQC - V2.1
259 2015

Dholaniya PS, Ghosh S, Surampudi BR, Kondapi AK. A knowledge driven supervised learning approach to identify gene network of differentially up-regulated genes during neuronal senescence in Rattus norvegicus. BioSystems. 2015;

258 2015
Cheedipudi S, Puri D, Saleh A, et al. A fine balance: epigenetic control of cellular quiescence by the tumor suppressor PRDM2/RIZ at a bivalent domain in the cyclin a gene. Nucleic Acids Res. 2015;
257 2015
Abraham A, Varatharajan S, Karathedath S, et al. RNA expression of genes involved in cytarabine metabolism and transport predicts cytarabine response in acute myeloid leukemia. Pharmacogenomics. 2015;:1-14.
256 2015 Vanlalruati C, Mandal S, Gurusubramanian G, Senthil kumar N. Complete mitochondrial genome of Chocolate Pansy, Junonia iphita (Lepidoptera: Nymphalidae: Nymphalinae). Mitochondrial DNA. 2015;:1-2. NGS
255 2015

Manjegowda MC,Deb G,Kumar N,Limaye AM. Expression profiling of genes modulated by estrogen, EGCG or both in MCF-7 breast cancer cells. Genomics Data. 2015

254 2015
Nithin C, Patwa N, Thomas A, Bahadur RP, Basak J. Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures. BMC Plant Biol. 2015;15(1):140.
253 2015
Gupta KP, Dholaniya PS, Chekuri A, Kondapi AK. Analysis of gene expression during aging of CGNs in culture: implication of SLIT2 and NPY in senescence. Age (Dordr). 2015;37(3):9789.
252 2015

Shukla A, Singh VK, Bharadwaj DR, et al. De Novo Assembly of Bitter Gourd Transcriptomes:Gene Expression and Sequence Variations in Gynoecious and Monoecious Lines. PLoS ONE. 2015;10(6):e0128331.

251 2015

Subudhi AK, Boopathi PA, Pandey I, et al. Plasmodium falciparum Complicated Malaria: Modulation and Connectivity between Exportome and Variant Surface Antigen Gene Families. Mol Biochem Parasitol. 2015.

250 2015
Sahoo L, Kumar S, Das SP, et al. Complete mitochondrial genome sequence of Heteropneustes fossilis obtained by paired end next generation sequencing. Mitochondrial DNA. 2015;:1-2
249 2015
Rastogi S, Kalra A, Gupta V, et al. Unravelling the genome of Holy basil: an "incomparable" "elixir of life" of traditional Indian medicine. BMC Genomics. 2015;16:413.
248 2015
Padiadpua J, Baloni  P, Chandra N. Gene expression profiles of wild-type and isoniazid-resistant strains of Mycobacterium smegmatis. Science Direct. 2015 
247 2015
Fonseca DJ, Patiño LC, Suárez YC, et al. Next generation sequencing in women affected by nonsyndromic premature ovarian failure displays new potential causative genes and mutations. Fertil Steril. 2015
246 2015
Ghag SB, Shekhawat UK, Ganapathi TR. Small RNA Profiling of Two Important Cultivars of Banana and Overexpression of miRNA156 in Transgenic Banana Plants. PLoS ONE. 2015;10(5):e0127179.
245 2015
B. Kesavan, K.V. Srividhya, S. Krishnaswamy, Mugasimangalam Raja, N. Vidya, A.V.S.K. Krishna Mohan. Understanding the virulence of the entero-aggregative E. coli O104:H4.Int. J. of Bioinformatics Research and Applications. 2015
244 2015
Arya R, R R, Rs S and Princy S. SarA based Novel Therapeutic Candidate against Staphylococcus aureus associated with Vascular Graft Infections. Front. Microbiol.2015
243 2015
Kanaujia PK, Bajaj P, Singhal N, et al. Proteomic analysis of Yersinia enterocolitica biovar 1A under iron-rich and iron-poor conditions indicate existence of efficiently regulated mechanisms of iron homeostasis.Journal of Proteomics. 2015
Mol Bio
242 2015
Chakraborty N, Sharma P, Kanyuka K, et al. Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation. PLoS ONE. 2015;10(2):e0117819.
NGS Analysis
241 2015
Bose D, Shetty M, Kutty A.V.M, et al. Molecular Delineation of Partial Trisomy 14q and Partial Trisomy 12p in a Patient with Dysmorphic Features, Heart Defect and Developmental Delay. Cytogenet Genome Res. 2015
240 2015
Vaid N, Pandey P, Srivastava VK, Tuteja N. Pea lectin receptor-like kinase functions in salinity adaptation without yield penalty, by alleviating osmotic and ionic stresses and upregulating stress-responsive genes. Plant Mol Biol. 2015.
Microarray Analysis
239 2015
Kumar D, Datta R, Hazra S, Sultana A, Mukhopadhyay R, Chattopadhyay S. Transcriptomic Profiling of Arabidopsis thaliana Mutant pad2.1 in Response to Combined Cold and Osmotic Stress. PLoS ONE. 2015;10(3):e0122690.
Array Design
238 2015
Chendamarai E, Ganesan S, Alex AA, et al. Comparison of newly diagnosed and relapsed patients with acute promyelocytic leukemia treated with arsenic trioxide: insight into mechanisms of resistance. PLoS ONE. 2015;10(3):e0121912.
NGS & Microarray
237 2015
Pallavi B, Shankar KM, Abhiman PB, Iqlas A.Identification of putative genes involved in parasitism in the anchor worm, Lernaea cyprinacea by de novo Transcriptome analysis.Experimental Parasitology. 2015
236 2015
Rajagopal I, Sankareswaran UM. An Adaptive Particle Swarm Optimization Algorithm for Solving DNA Fragment Assembly Problem. Current Bioinformatics. 2015
235 2015
Srivastava VK, Suneetha KJ, Kaur R. The mitogen-activated protein kinase CgHog1 is required for iron homeostasis, adherence and virulence in Candida glabrata. FEBS J. 2015.
234 2015
Banerjee A, Ghoshal PK, Sengupta K.Novel Linkage of LMNA Single nucleotide polymorphism with Dilated Cardiomyopathy in an Indian case study. IJC Heart & Vasculature. 2015
NGS Analysis
233 2015
Rai R, Javvadi S, Chatterjee S. Cell-cell signaling promotes ferric iron uptake in Xanthomonas oryzae pv. oryzicola that contribute to its virulence and growth inside rice. Mol Microbiol. 2015.
232 2015

Sen D, Chandrababunaidu MM, Singh D, et al. Draft Genome Sequence of the Terrestrial Cyanobacterium Scytonema millei VB511283, Isolated from Eastern India. Genome Announc. 2015;3(2)

231 2015
Mittra I, Khare NK, Raghuram GV, Chaubal R, Khambatti F, Gupta D, Gaikwad A, Prasannan P, Singh A, Iyer A, Singh A, Upadhyay P, Nair NK, Mishra PK and Dutt A. Circulating nucleic acids damage DNA of healthy cells by integrating into their genomes.J. Biosci. 40 91–111.2015  
230 2015
Swain S, Singh N and Nandi AK. Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.J. Biosci. 40 137–146.2015
229 2015
Haddada NJ,  AlShagoora B, Batainh AM, et al. Draft genome sequence of the Algerian bee Apis mellifera intermissa. Genomics Data. 2015
228 2015
Tirumalai PS. Metabolic Gene Expression Shift by Listeria monocytogenes in Co-Culture Biofilms.Canadian J of Microbiology. 2015
227 2015
Backiyarani S, Uma S, Nithya S, et al. Genome-Wide Analysis and Differential Expression of Chitinases in Banana Against Root Lesion Nematode (Pratylenchus coffeae) and Eumusa Leaf Spot (Mycosphaerella eumusae) Pathogens. J Applied Biochemistry and Biotechnology. 2015
226 2015
Shekhar MS, Gomathi A, Gopikrishna G, Ponniah AG. Gene expression profiling in gill tissues of White spot syndrome virus infected black tiger shrimp Penaeus monodon by DNA microarray.VirusDisease. 2015
Custom Array Design
225 2015
Goodsmith N, Guo XV, Vandal OH, et al. Disruption of an M. tuberculosis Membrane Protein Causes a Magnesium-dependent Cell Division Defect and Failure to Persist in Mice. PLoS Pathog. 2015;11(2):e1004645.
Custom Array Design
224 2015 Mohan A, Padiadpu J, Baloni P, Chandra N. Complete Genome Sequences of a Mycobacterium smegmatis Laboratory Strain (MC2 155) and Isoniazid-Resistant (4XR1/R2) Mutant Strains. Genome Announc. 2015;3(1) NGS
223 2015
Malhotra V, Agrawal R,Duncan TR,Saini DK, Clark-Curtiss JE.Mycobacterium tuberculosis Response Regulators, DevR and NarL Interact In Vivo and Co-Regulate Gene Expression during Aerobic Nitrate Metabolism.J Biol Chem. 2015
Array design and Microarray
222 2015 Haddad NJ. Mitochondrial genome of the Levant Region honeybee, Apis mellifera syriaca (Hymenoptera: Apidae). Mitochondrial DNA. 2015;:1-2. NGS
221 2015

Gopurappilly R, Bhonde R. Transcriptional profiling and functional network analyses of islet-like clusters (ILCs) generated from pancreatic stem cells in vitro. Genomics. 2015

220 2015

Haddad NJ, Batainh AM, Migdadi OS, et al. Next generation sequencing of Apis mellifera syriaca identifies genes for Varroa resistance and beneficial bee keeping traits. Insect Sci. 2015

219 2015

Nature-inspired novel Cuckoo Search Algorithm for genome sequence assembly. Sadhana J.2015

218 2015

Dasgupta MG, Dharanishanthi V, Agarwal I, Krutovsky KV. Development of genetic markers in eucalyptus species by target enrichment and exome sequencing. PLoS ONE. 2015;10(1):e0116528.

Microarray and NGS
217 2015
Mothe T, Sultanpuram VR. Metagenomic analysis of Lonar soda lake samples.Int J Adv Res Biol Sci. 2015
216 2014 Saint M, Sawhney S, Sinha I, et al. The TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation. Mol Cell Biol. 2014;34(9):1547-63. Microarray services
215 2014
Beta M, Khetan V, Chatterjee N, et al. EpCAM knockdown alters microRNA expression in retinoblastoma--functional implication of EpCAM regulated miRNA in tumor progression. PLoS ONE. 2014;9(12):e114800.
214 2014
Panyakampol J, Cheevadhanarak S, Sutheeworapong S, et al. Physiological and transcriptional responses to high temperature in Arthrospira (Spirulina) platensis C1. Plant Cell Physiol. 2014
213 2014
Verma A, Rajput S, Kumar S, De S, Chakravarty AK, Kumar R, Datta TK. Differential histone modification status of spermatozoa in relation to fertility of Buffalo bulls. Journal of Cellular Biochemistry. 2014
Array Design
212 2014

Bahamondea PA, McMasterb ME, Servosc MR, Martyniuka CJ, Munkittricka KR. Molecular pathways associated with the intersex condition in rainbow darter (Etheostoma caeruleum) following exposures to municipal wastewater in the Grand River basin, ON, Canada. Aquatic Toxicology J. 2014.

NGS Service
211 2014

Dhamija N, Choudhary D, Ladha JS, Pillai B, Mitra D. Tat predominantly associates with host promoter elements in HIV-1 infected T-cells: regulatory basis of transcriptional repression of c-Rel. FEBS J. 2014

210 2014
Kamala S, Makeshkumar T, Sreekumar J, Chakrabarti SK.Whole transcriptome sequencing of diseased elephant foot yam reveals complete genome sequence of dasheen mosaic virus. Virology Reports. 2014
NGS Service
209 2014
Jagtap, J.C., et al. Secretory prostate apoptosis response (Par)-4 sensitizes multicellular spheroids (MCS) of glioblastoma multiforme cells to tamoxifen-induced cell death. FEBS Open Bio. 2014
208 2014
Baloni P, Padiadpu J, Singh A, Gupta KR, Chandra N. Identifying feasible metabolic routes in Mycobacterium smegmatis and possible alterations under diverse nutrient conditions. BMC Microbiol. 2014;14(1):276.
Array Design
207 2014
Devi V, Yadav E, Rao T, Satheesh K, Suresh P, Manasa B.Nucleotide Sequencing and Phylogenetic Analysis Using PCR Amplicons of U3 Gene of Jaagsiekte Sheep Retrovirus (JSRV) Detected in Natural Cases of Ovine Pulmonary Adenocarcinoma in India. Open Journal of Veterinary Medicine. 2014
206 2014
Tuteja N, Sahoo RK, Huda KMK, Tula S, Renu T.OsBAT1 Augments Salinity Stress Tolerance by Enhancing Detoxification of ROS and Expression of Stress-Responsive Genes in Transgenic Rice. Plant Molecular Biology Reporter. 2014
205 2014
Snijesh VP, Singh S, Vennila JJ. Rheumatoid Arthritis Candidate Genes Identification by Investigating Core and Periphery Interaction Structures. Computational Intelligence in Medical Informatics Journal. 2014
204 2014
Prakash P, Ghosliya D, Gupta V. Identification of conserved and novel microRNAs in Catharanthus roseus by deep sequencing and computational prediction of their potential targets.Gene.2014
NGS service
203 2014
Boopathi PA, Subudhi AK, Garg S, et al. An in vivo Transcriptome Dataset of Natural Antisense Transcripts from Plasmodium falciparum Clinical Isolates.J Genomics Data.2014
202 2014
Taranua I, Marina ED, Pistola GC, et al.Exposure to zearalenone mycotoxin alters in vitro porcine intestinal epithelial cells by differential gene expression. ScienceDirect. 2014
201 2014
Snijesh. V.P, Singh S. Network Based Approach for Understanding the Chondrocyte Biology for Rheumatoid  Arthritis. IJIRCCE. 2014
200 2014
Cartagena JA, Seki M, Tanaka M, Yamauchi T, Sato S, Hirakawa H, Tsuge T. Gene Expression Profiles in Jatropha Under Drought Stress and During Recovery. Springer US. 2014
199 2014
Likhoshvay A, Lomakina A, Grachev M. The complete alk sequences of Rhodococcus erythropolis from Lake Baikal. Springer Plus. 2014 
NGS service
198 2014
BNV Priya , K Mahavishnan, DS Gurumurthy,  H Bindumadhava, Upadhyay AP, Sharma NK. Fulvic Acid (FA) for Enhanced Nutrient Uptake and Growth: Insights from Biochemical and Genomic Studies. Journal of Crop Improvement. 2014
NGS service
197 2014
Patino LC, Battu R, Ortega-Recalde O, Nallathambi J, Anandula VR, et al. Exome Sequencing Is an Efficient Tool for Variant Late-Infantile Neuronal Ceroid Lipofuscinosis Molecular Diagnosis. PLoS ONE. 2014
NGS service
196 2014
Aiyaz M, Bipin C, Pantulwar V, Mugasimangalam R, Shanley CA, Ordway DJ, Orme IA. Whole genome response in guinea pigs infected with the high virulence strain Mycobacterium tuberculosis TT372. Tuberculosis J. 2014
195 2014 Upadhyay S, Phukan UJ, Mishra S, Shukla RK. De novo leaf and root transcriptome analysis identified novel genes involved in Steroidal sapogenin biosynthesis in Asparagus racemosus. BMC Genomics. 2014;15(1):746. NGS service
194 2014
Agrawal R, Pandey P, Jha P, Dwivedi V, Sarkar C, Kulshreshtha R. Hypoxic signature of microRNAs in glioblastoma: insights from small RNA deep sequencing. BMC Genomics. 2014;15(1):686.
193 2014
Biswal DK, Chatterjee A, Bhattacharya A, Tandon V. The mitochondrial genome of Paragonimus westermani (Kerbert, 1878), the Indian isolate of the lung fluke representative of the family Paragonimidae (Trematoda). PeerJ. 2014
SeqQC and NGS service
192 2014
Kumar KV, Vijayachari P, Raj RV, et al. Expression microarray of leptospiral strains recovered from the patients with pulmonary haemorrhages-a special reference to fatal complications. Int.J.Curr.Microbiol.App.Sci. 2014
191 2014
Shashni R, Qayyum MZ, Vishalini V, Dey D, Sen R. Redundancy of primary RNA-binding functions of the bacterial transcription terminator Rho. Nucleic Acids Res. 2014
190 2014 Ahmad HM, Muiwo P, Ramachandran SS, et al. miR-22 regulates expression of oncogenic Neuro-epithelial transforming gene 1, NET1. FEBS J. 2014 Microarray
189 2014
Rastogi S, Meena S, Bhattacharya A, et al. De novo sequencing and comparative analysis of holy and sweet basil transcriptomes. BMC Genomics. 2014;15(1):588.
188 2014
Boopathi PA, Subudhi AK, Garg S, et al. Dataset of Natural Antisense Transcripts in P. vivax clinical isolates derived using custom designed strand-specific microarray.J Genomics Data.2014
187 2014 Bellale E, Naik M, Vb V, et al. Diarylthiazole: an anti-mycobacterial scaffold potentially targeting PrrB-PrrA two component system. J Med Chem. 2014 Microarray
186 2014
Verma A, Rajput S, De S, Kumar R,CK Atish, KD Tirtha. Genome-wide profiling of sperm DNA methylation in relation to buffalo (Bubalus bubalis) bull fertility.J Theriogenology.2014
185 2014
Nagaraj S, Raghavan AV, Rao SN, Manjappara UV. Obestatin and Nt8U influence glycerolipid metabolism and PPAR gamma signaling in mice. Int J Biochem Cell Biol. 2014
184 2014
Banu SA, Huda KMK, Sahoo KR, et al. Pea p68 Imparts Salinity Stress Tolerance in Rice by Scavenging of ROS-Mediated H2O2 and Interacts with Argonaute. J Plant Molecular Biology.2014
183 2014 Dhanjala S, Singha KA, Singh S. Global Gene Expression Analysis of Bacterial Stress Response to Elevated Concentrations of Toxic Metalloids—Selenium and Arsenic. J Geomicrobiology. 2014 Earray and Biointerpreter
182 2014 Mruthyunjaya S, Parveen D, Shah RD, et al. Gene expression analysis of laminin-1-induced neurite outgrowth in human mesenchymal stem cells derived from bone marrow. J Biomed Mater Res A. 2014 Microarray
181 2014 Priya S, Nigam A, Bajpai P, Kumar S. Diethyl Maleate Inhibits MCA+TPA Transformed Cell Growth via Modulation of GSH, MAPK, and Cancer Pathways. Chem Biol Interact. 2014 Biointerpreter
180 2014 Kumar M, Gantasala NP, Roychowdhury T, et al. De Novo Transcriptome Sequencing and Analysis of the Cereal Cyst Nematode, Heterodera avenae. PLoS ONE. 2014;9(5):e96311. NGS Service
179 2014
Ghosh dasgupta M, George BS, Bhatia A, Sidhu OP. Characterization of Withania somnifera Leaf Transcriptome and Expression Analysis of Pathogenesis - Related Genes during Salicylic Acid Signaling. PLoS ONE. 2014;9(4):e94803.
NGS Service
178 2014 Ella KM, Kandaswamy S. Vaccine Composition Comprising an Inactivated Chikungunya Virus strain. US Patent Application Publication. 2014 NGS Service
177 2014 Janbon G, Ormerod KL, Paulet D, et al. Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation. PLoS Genet. 2014. NGS Service
176 2014 Chamoli M, Singh A, Malik Y, Mukhopadhyay A. A novel kinase regulates dietary restriction-mediated longevity in Caenorhabditis elegans. Aging Cell. 2014 Microarray Service
175 2014 Subudhi AK, Boopathi PA, Garg S, et al. Natural antisense transcripts in Plasmodium falciparum isolates from patients with complicated malaria. Exp Parasitol. 2014 Microarray Service
174 2014 Saint M, Sawhney S, Sinha I, et al. TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation. Mol Cell Biol. 2014 Microarray Service
173 2014 Pillai S, Behra R, Nestler H, Suter MJ, Sigg L, Schirmer K. Linking toxicity and adaptive responses across the transcriptome, proteome, and phenotype of Chlamydomonas reinhardtii exposed to silver. Proc Natl Acad Sci USA. 2014;111(9):3490-5. E Array Design
172 2014 Kureel J, Dixit M, Tyagi AM, et al. miR-542-3p suppresses osteoblast cell proliferation and differentiation, targets BMP-7 signaling and inhibits bone formation. Cell Death Dis. 2014;5:e1050. Microarray Service
171 2014 Ghag SB, Shekhawat UK, Ganapathi TR. Host-induced post-transcriptional hairpin RNA-mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana. Plant Biotechnol J. 2014; NGS services
170 2014 Dabir SS, Das D, Nallathambi J, Mangalesh S, Yadav NK, Schouten JS. Differential systemic gene expression profile in patients with diabetic macular edema: Responders versus nonresponders to standard treatment. Indian J Ophthalmol. 2014;62(1):66-73. Microarray and Biointerpreter
169 2014 Avisetti DR, Babu KS, Kalivendi SV. Activation of p38/JNK Pathway Is Responsible for Embelin Induced Apoptosis in Lung Cancer Cells: Transitional Role of Reactive Oxygen Species. PLoS ONE. 2014;9(1):e87050. Microarray and Biointerpreter
168 2014 Baranski M, Gopikrishna G, Robinson NA, et al. The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs. PLoS ONE. 2014;9(1):e85413. RNA extraction
167 2013 Tiruvayipati S, Bhassu S, Kumar N, et al. Genome anatomy of the gastrointestinal pathogen, Vibrio parahaemolyticus of crustacean origin. Gut Pathog. 2013;5(1):37. NGS service
166 2013 Thomas A, Mahantshetty U, Kannan S, et al. Expression profiling of cervical cancers in Indian women at different stages to identify gene signatures during progression of the disease. Cancer Med. 2013;2(6):836-48. Biointerpreter
165 2013 Aravindraja C, Viszwapriya D, Karutha pandian S. Ultradeep 16S rRNA sequencing analysis of geographically similar but diverse unexplored marine samples reveal varied bacterial community composition. PLoS ONE. 2013;8(10):e76724. NGS service
164 2013 Paul S, Kundu A, Pal A. Identification and expression profiling of Vigna mungo microRNAs from leaf small RNA transcriptome by deep sequencing. J Integr Plant Biol. 2014;56(1):15-23. NGS Service
163 2013 Huda KM, Banu MS, Garg B, Tula S, Tuteja R, Tuteja N. OsACA6, a P-type IIB Ca²⁺ ATPase promotes salinity and drought stress tolerance in tobacco by ROS scavenging and enhancing the expression of stress-responsive genes. Plant J. 2013;76(6):997-1015.
162 2013 A bioinformatics pipeline for sequence to structure: A case study with a Cml patient undergoing treatment with imatinib. SeqQC
161 2013 Thomas E, Roman E, Claypool S, Manzoor N, Pla J, Panwar SL. Mitochondria influence CDR1 efflux pump activity, Hog1-mediated oxidative stress pathway, iron homeostasis, and ergosterol levels in Candida albicans. Antimicrob Agents Chemother. 2013;57(11):5580-99.
160 2013 Garg R, Verma M, Agrawal S, Shankar R, Majee M, Jain M. Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata, Provides Novel Insights into the Salinity and Submergence Tolerance Factors. DNA Res. 2014;21(1):69-84. NGS service
159 2013 Boopathi PA, Subudhi AK, Garg S, et al. Revealing natural antisense transcripts from Plasmodium vivax isolates: evidence of genome regulation in complicated malaria. Infect Genet Evol. 2013;20:428-43. E Array Design
158 2013 Wang B, Niu D, Lam TH, Xiao Z, Ren EC. Mapping the p53 transcriptome universe using p53 natural polymorphs. Cell Death Differ. 2014;21(4):521-32. NGS service
157 2013 Rao PP, Reddy YN, Ganesh K, Nair SG, Niranjan V, Hegde NR. Deep sequencing as a method of typing bluetongue virus isolates. J Virol Methods. 2013;193(2):314-9. SeqQC
156 2013 Crudo A, Petropoulos S, Suderman M, et al. Effects of antenatal synthetic glucocorticoid on glucocorticoid receptor binding, DNA methylation, and genome-wide mRNA levels in the fetal male hippocampus. Endocrinology. 2013;154(11):4170-81. E Array Design
155 2013 Walker R, Gissot M, Huot L, et al. Toxoplasma transcription factor TgAP2XI-5 regulates the expression of genes involved in parasite virulence and host invasion. J Biol Chem. 2013;288(43):31127-38. Microarray Service
154 2013 Biswal DK, Ghatani S, Shylla JA, et al. An integrated pipeline for next generation sequencing and annotation of the complete mitochondrial genome of the giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899. PeerJ. 2013;1:e207. NGS Service
153 2013 Mudalkar S, Golla R, Ghatty S, Reddy AR. De novo transcriptome analysis of an imminent biofuel crop, Camelina sativa L. using Illumina GAIIX sequencing platform and identification of SSR markers. Plant Mol Biol. 2014;84(1-2):159-71. NGS service
152 2013 Roth D, Finkelshtein A, Ingham C, et al. Identification and characterization of a highly motile and antibiotic refractory subpopulation involved in the expansion of swarming colonies of Paenibacillus vortex. Environ Microbiol. 2013;15(9):2532-44.
151 2013 Wang B, Niu D, Lai L, Ren EC. p53 increases MHC class I expression by upregulating the endoplasmic reticulum aminopeptidase ERAP1. Nat Commun. 2013;4:2359. NGS service
150 2013 Kumar S, Vikram S, Raghava GP. Genome annotation of Burkholderia sp. SJ98 with special focus on chemotaxis genes. PLoS ONE. 2013;8(8):e70624. NGS service
149 2013 Sasibhushan S, C g p R, Ponnuvel KM. Genome wide microarray based expression profiles during early embryogenesis in diapause induced and non-diapause eggs of polyvoltine silkworm Bombyx mori. Genomics. 2013;102(4):379-87. Microarray service
148 2013 Das M, Saudagar P, Sundar S, Dubey VK. Miltefosine-unresponsive Leishmania donovani has a greater ability than miltefosine-responsive L. donovani to resist reactive oxygen species. FEBS J. 2013;280(19):4807-15. Microarray service
147 2013 Fanibunda SE, Modi DN, Bandivdekar AH. HIV gp120 induced gene expression signatures in vaginal epithelial cells. Microbes Infect. 2013;15(12):806-15. Microarray service
146 2013 A Novel Cuckoo Search Algorithm for Genome Sequence Assembly Microarray service
145 2013 Walker CG, Littlejohn MD, Meier S, Roche JR, Mitchell MD. DNA methylation is correlated with gene expression during early pregnancy in Bos taurus. Physiol Genomics. 2013;45(7):276-86. E Array Design
144 2013 Fréalle E, Aliouat-denis CM, Delhaes L, Hot D, Dei-cas E. Transcriptomic insights into the oxidative response of stress-exposed Aspergillus fumigatus. Curr Pharm Des. 2013;19(20):3713-37. E Array Design
143 2013
Poulami Das. Identification of Specific Genetic Alterations in Cervical Cancer by Genome wide LOH and Copy Number Analysis.Indian ETD Repository. 2013.
NGS service
142 2013 Banerjee S, Khandelia P, Melangath G, Bashir S, Nagampalli V, Vijayraghavan U. Splicing functions and global dependency on fission yeast slu7 reveal diversity in spliceosome assembly. Mol Cell Biol. 2013;33(16):3125-36..
141 2013 Ortega-recalde O, Vergara JI, Fonseca DJ, et al. Whole-exome sequencing enables rapid determination of xeroderma pigmentosum molecular etiology. PLoS ONE. 2013;8(6):e64692. NGS service
140 2013 Sellathurai J, Cheedipudi S, Dhawan J, Schrøder HD. A novel in vitro model for studying quiescence and activation of primary isolated human myoblasts. PLoS ONE. 2013;8(5):e64067. Biointerpreter and Microarray service
139 2013 Chakraborty U, Mohamed A, Kakade P, Mugasimangalam RC, Sadhale PP, Sanyal K. A stable hybrid containing haploid genomes of two obligate diploid Candida species. Eukaryotic Cell. 2013;12(8):1061-71. Microarray service
138 2013 Zhang S, Guo T, Chan H, Sze SK, Koh CG. Integrative transcriptome and proteome study to identify the signaling network regulated by POPX2 phosphatase. J Proteome Res. 2013;12(6):2525-36. Biointerpreter
137 2013 ArgP protein of Escherichia coli: roles in osmoregulation, gene regulation and inter-relationship with LysG of Corynebacterium glutamicum, Gene expression and Microarray Service
136 2013 Sangwan RS, Tripathi S, Singh J, Narnoliya LK, Sangwan NS. De novo sequencing and assembly of Centella asiatica leaf transcriptome for mapping of structural, functional and regulatory genes with special reference to secondary metabolism. Gene. 2013;525(1):58-76. NGS Service
135 2013 Agarwal P, Srivastava R, Srivastava AK, Ali S, Datta M. miR-135a targets IRS2 and regulates insulin signaling and glucose uptake in the diabetic gastrocnemius skeletal muscle. Biochim Biophys Acta. 2013;1832(8):1294-303. Gene Expression
134 2013 Shwetha S, Gouthamchandra K, Chandra M, Ravishankar B, Khaja MN, Das S. Circulating miRNA profile in HCV infected serum: novel insight into pathogenesis. Sci Rep. 2013;3:1555. Microarray Service
133 2013 Priya S, Nigam A, Bajpai P, Kumar S. Dysregulation of pathways involved in the processing of cancer and microenvironment information in MCA + TPA transformed C3H/10T1/2 cells. In Vitro Cell Dev Biol Anim. 2013;49(4):295-305. Biointerpreter
132 2013 Kumar S, Nigam A, Priya S, Bajpai P, Budhwar R. Lipoic acid prevents Cr(6+) induced cell transformation and the associated genomic dysregulation. Environ Toxicol Pharmacol. 2013;36(1):182-93. Biointerpreter
131 2013 Annadurai RS, Neethiraj R, Jayakumar V, et al. De Novo transcriptome assembly (NGS) of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids. PLoS ONE. 2013;8(2):e56217. NGS Service and SeqQc
130 2013 Thakur J, Sanyal K. Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans. Genome Res. 2013;23(4):638-52. Microarray service
129 2013 Deepa PR, Vandhana S, Krishnakumar S. Fatty acid synthase inhibition induces differential expression of genes involved in apoptosis and cell proliferation in ocular cancer cells. Nutr Cancer. 2013;65(2):311-6. Biointerpreter and Microarray service
128 2013 A Targeted Enrichment Strategy for Massively Parallel Sequencing of Angiosperm Plastid Genomes Earray design and NGS service
127 2013 Jain S, Chodisetti SB, Agrewala JN. Combinatorial signaling through TLR-2 and CD86 augments activation and differentiation of resting B cells. PLoS ONE. 2013;8(1):e54392. Biointerpreter and E Array Design
126 2013 Satija NK, Sharma D, Afrin F, Tripathi RP, Gangenahalli G. High throughput transcriptome profiling of lithium stimulated human mesenchymal stem cells reveals priming towards osteoblastic lineage. PLoS ONE. 2013;8(1):e55769. Microarray Service
125 2013 Beta M, Venkatesan N, Vasudevan M, Vetrivel U, Khetan V, Krishnakumar S. Identification and Insilico Analysis of Retinoblastoma Serum microRNA Profile and Gene Targets Towards Prediction of Novel Serum Biomarkers. Bioinform Biol Insights. 2013;7:21-34. Microarray Service
124 2013 Basu M, Roy SS. Wnt/β-catenin pathway is regulated by PITX2 homeodomain protein and thus contributes to the proliferation of human ovarian adenocarcinoma cell, SKOV-3. J Biol Chem. 2013;288(6):4355-67. Microarray Service
123 2012 Agarwal G, Jhanwar S, Priya P, et al. Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PLoS ONE. 2012;7(12):e52443. NGS Service
122 2012 Pluess-li Y, Bongiovanni S, Oakeley EJ, Johnson KJ, Staedtler F. The virtuous technology cycle concept and its application in next-generation sequencing. Drug Discov Today. 2012;17(17-18):1015-22.
121 2012 Antibiotic Resistance in Co-Culture Biofilm of Listeria monocytogenesJ0161.
120 2012 Genome sequence and comparative genomics of a Salmonella enterica serovar Typhi Strain in Malaysia NGS Service
119 2012 Majumdar SD, Vashist A, Dhingra S, et al. Appropriate DevR (DosR)-mediated signaling determines transcriptional response, hypoxic viability and virulence of Mycobacterium tuberculosis. PLoS ONE. 2012;7(4):e35847. Microarray Service
118 2012 Rai R, Ranjan M, Pradhan BB, Chatterjee S. Atypical regulation of virulence-associated functions by a diffusible signal factor in Xanthomonas oryzae pv. oryzae. Mol Plant Microbe Interact. 2012;25(6):789-801. E Array Design
117 2012 Kato-maeda M, Shanley CA, Ackart D, et al. Beijing sublineages of Mycobacterium tuberculosis differ in pathogenicity in the guinea pig. Clin Vaccine Immunol. 2012;19(8):1227-37. Microarray Service
116 2012 Mishra S, Bhagavat R, Chandra N, Vijayarangan N, Rajeswari H, Ajitkumar P. Cloning, expression, purification, and biochemical characterisation of the FIC motif containing protein of Mycobacterium tuberculosis. Protein Expr Purif. 2012;86(1):58-67.
115 2012 Rao PP, Reddy YN, Hegde NR. Complete genome sequence of bluetongue virus serotype 9: implications for serotyping. J Virol. 2012;86(15):8333. NGS Service
114 2012 Jain R, Dey B, Tyagi AK. Development of the first oligonucleotide microarray for global gene expression profiling in guinea pigs: defining the transcription signature of infectious diseases. BMC Genomics. 2012;13:520. Microarray Service
113 2012 Development of TILLING by sequencing platform towards enhanced leaf yield in tobacco
112 2012 Kumar S, Randhawa A, Ganesan K, Raghava GP, Mondal AK. Draft genome sequence of salt-tolerant yeast Debaryomyces hansenii var. hansenii MTCC 234. Eukaryotic Cell. 2012;11(7):961-2. NGS Service
111 2012 James R, Vishwakarma S, Chivukula IV, et al. EGFR targeting monoclonal antibody combines with an mTOR inhibitor and potentiates tumor inhibition by acting on complementary signaling hubs. Cancer Med. 2012;1(2):114-27. Biointerpreter and Microarray
110 2012 Robinson N, Sahoo PK, Baranski M, et al. Expressed sequences and polymorphisms in rohu carp (Labeo rohita, Hamilton) revealed by mRNA-seq. Mar Biotechnol. 2012;14(5):620-33.
109 2012 Tirumalai PS, Prakash S. Expression of virulence genes by Listeria monocytogenes J0161 in natural environment. Braz J Microbiol. 2012;43(2):834-43. E Array Design
108 2012 Sreenivasan S, Thirumalai K, Krishnakumar S. Expression profile of genes regulated by curcumin in Y79 retinoblastoma cells. Nutr Cancer. 2012;64(4):607-16. Biointerpreter
107 2012 Baddam R, Kumar N, Thong KL, et al. Genetic fine structure of a Salmonella enterica serovar Typhi strain associated with the 2005 outbreak of typhoid fever in Kelantan, Malaysia. J Bacteriol. 2012;194(13):3565-6. NGS Service
106 2012 Yap KP, Gan HM, Teh CS, et al. Genome sequence and comparative pathogenomics analysis of a Salmonella enterica Serovar Typhi strain associated with a typhoid carrier in Malaysia. J Bacteriol. 2012;194(21):5970-1. NGS Service
105 2012 Kumar S, Kushwaha H, Bachhawat AK, Raghava GP, Ganesan K. Genome sequence of the oleaginous red yeast Rhodosporidium toruloides MTCC 457. Eukaryotic Cell. 2012;11(8):1083-4. NGS Service
104 2012 Dutta P, Tanti GK, Sharma S, et al. Global epigenetic changes induced by SWI2/SNF2 inhibitors characterize neomycin-resistant mammalian cells. PLoS ONE. 2012;7(11):e49822. Microarray Service
103 2012 Hendre PS, Kamalakannan R, Varghese M. High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform. Plant Biotechnol J. 2012;10(6):646-56. NGS Service
102 2012 Ladha J, Sinha S, Bhat V, Donakonda S, Rao SM. Identification of genomic targets of transcription factor AEBP1 and its role in survival of glioma cells. Mol Cancer Res. 2012;10(8):1039-51. Biointerpreter
101 2012 Yap KP, Teh CS, Baddam R, et al. Insights from the genome sequence of a Salmonella enterica serovar Typhi strain associated with a sporadic case of typhoid fever in Malaysia. J Bacteriol. 2012;194(18):5124-5. NGS Service
100 2012 Stamm P, Ravindran P, Mohanty B, Tan EL, Yu H, Kumar PP. Insights into the molecular mechanism of RGL2-mediated inhibition of seed germination in Arabidopsis thaliana. BMC Plant Biol. 2012;12:179. Microarray Service
99 2012 Mechanism Of Action Of Plumbagin In Brca1 Blocked Ovarian Cancer Cells: An Analysis By Suppression Subtractive Hybridization (Ssh) And Micro Array. Biointerpreter
98 2012 Vandhana S, Lakshmi TS, Indra D, Deepa PR, Krishnakumar S. Microarray analysis and biochemical correlations of oxidative stress responsive genes in retinoblastoma. Curr Eye Res. 2012;37(9):830-41.
97 2012 Venkatesan N, Krishnakumar S, Deepa PR, Deepa M, Khetan V, Reddy MA. Molecular deregulation induced by silencing of the high mobility group protein A2 gene in retinoblastoma cells. Mol Vis. 2012;18:2420-37. Biointerpreter and microarray analysis.
96 2012 Krishna S, Nair A, Cheedipudi S, et al. Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata. Nucleic Acids Res. 2013;41(1):599-616. NGS Service
95 2012 Malhotra V, Okon BP, Clark-curtiss JE. Mycobacterium tuberculosis protein kinase K enables growth adaptation through translation control. J Bacteriol. 2012;194(16):4184-96. E Array Design
94 2012 Annadurai RS, Jayakumar V, Mugasimangalam RC, et al. Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties. BMC Genomics. 2012;13:663. NGS Service
93 2012 Kumar N, Mukhopadhyay AK, Patra R, et al. Next-generation sequencing and de novo assembly, genome organization, and comparative genomic analyses of the genomes of two Helicobacter pylori isolates from duodenal ulcer patients in India. J Bacteriol. 2012;194(21):5963-4. NGS Service
92 2012 Shashni R, Mishra S, Kalayani BS, Sen R. Suppression of in vivo Rho-dependent transcription termination defects: evidence for kinetically controlled steps. Microbiology (Reading, Engl). 2012;158(Pt 6):1468-81. Microarray Service
91 2012 Diggle CP, Parry DA, Logan CV, et al. Prostaglandin transporter mutations cause pachydermoperiostosis with myelofibrosis. Hum Mutat. 2012;33(8):1175-81. Biointerpreter
90 2012 Hu S, Xie G, Zhang DX, et al. Synthesis and biological evaluation of crown ether fused quinazoline analogues as potent EGFR inhibitors. Bioorg Med Chem Lett. 2012;22(19):6301-5. BioInterpreter
89 2012 Castellana S, Romani M, Valente EM, Mazza T. A solid quality-control analysis of AB SOLiD short-read sequencing data. Brief Bioinformatics. 2013;14(6):684-95. SeqQC
88 2012 Mittal D, Madhyastha DA, Grover A. Genome-wide transcriptional profiles during temperature and oxidative stress reveal coordinated expression patterns and overlapping regulons in rice. PLoS ONE. 2012;7(7):e40899. Microarray Service
87 2012 Patra T, Koley H, Ramamurthy T, Ghose AC, Nandy RK. The Entner-Doudoroff pathway is obligatory for gluconate utilization and contributes to the pathogenicity of Vibrio cholerae. J Bacteriol. 2012;194(13):3377-85. Gene expression
86 2012 Time-dependant gene expression pattern of Listeria monocytogenes J0161 in biofilms E Array Design
85 2012 Gissot M, Walker R, Delhaye S, Huot L, Hot D, Tomavo S. Toxoplasma gondii chromodomain protein 1 binds to heterochromatin and colocalises with centromeres and telomeres at the nuclear periphery. PLoS ONE. 2012;7(3):e32671. Microarray Service
84 2012 Bhaskar AS, Gupta N, Rao PV. Transcriptomic profile of host response in mouse brain after exposure to plant toxin abrin. Toxicology. 2012;299(1):33-43. NGS Service
83 2012 Baddam R, Thong KL, Avasthi TS, et al. Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients with fatal and nonfatal typhoid fever in Papua New Guinea. J Bacteriol. 2012;194(18):5122-3. NGS Service
82 2012 Mittal D, Madhyastha DA, Grover A. Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually. Plant Sci. 2012;197:102-13.
81 2011 The development of molecular tools for detecting the impacts of municipal wastewater effluents(MWWE) on rainbow darter (Etheostoma caeruleum) Microarray
80 2011 Leibman D, Wolf D, Saharan V, et al. A high level of transgenic viral small RNA is associated with broad potyvirus resistance in cucurbits. Mol Plant Microbe Interact. 2011;24(10):1220-38. Microarray Design
79 2011 Bairwa G, Kaur R. A novel role for a glycosylphosphatidylinositol-anchored aspartyl protease, CgYps1, in the regulation of pH homeostasis in Candida glabrata. Mol Microbiol. 2011;79(4):900-13. Microarray service and E Arrays design
78 2011 Gkikopoulos T, Schofield P, Singh V, et al. A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization. Science. 2011;333(6050):1758-60. http://www.sciencemag.org/content/333/6050/1758.abstract NGS Service
77 2011 Kedia-mokashi NA, Mugasimangalam R, Aiyaz M, Mukherjee S, Balasinor NH. Aberrant expression of imprinted genes in post-implantation rat embryos. Life Sci. 2011;88(13-14):634-43. Gene Expression
76 2011 Moore DA, Shah NS. Alternative methods of diagnosing drug resistance--what can they do for me?. J Infect Dis. 2011;204 Suppl 4:S1110-9.
75 2011 Anand T, Vijayaraghavan R, Rao PV, Bansal I, Bhattacharya BK. Attenuation of sulfur mustard toxicity by S-2(2-aminoethylamino)ethyl phenyl sulfide (DRDE-07) in mouse liver. Toxicol Mech Methods. 2011;21(8):596-605. Biointerpreter
74 2011 Hameed S, Dhamgaye S, Singh A, Goswami SK, Prasad R. Calcineurin signaling and membrane lipid homeostasis regulates iron mediated multidrug resistance mechanisms in Candida albicans. PLoS ONE. 2011;6(4):e18684. Microarray Service
73 2011 Kumar NV, Rangarajan PN. Catabolite repression of phosphoenolpyruvate carboxykinase by a zinc finger protein under biotin- and pyruvate carboxylase-deficient conditions in Pichia pastoris. Microbiology (Reading, Engl). 2011;157(Pt 12):3361-9. E Array Design
72 2011 Jain S, Chodisetti SB, Agrewala JN. CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cells. PLoS ONE. 2011;6(6):e20651. E Array Design and Biointerpreter
71 2011 Kaur K, Pandey AK, Srivastava S, Srivastava AK, Datta M. Comprehensive miRNome and in silico analyses identify the Wnt signaling pathway to be altered in the diabetic liver. Mol Biosyst. 2011;7(12):3234-44. miRNA profiling
70 2011 Mirbahai L, Williams TD, Zhan H, Gong Z, Chipman JK. Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis. BMC Genomics. 2011;12:3. NGS Service
69 2011 Garg R, Patel RK, Tyagi AK, Jain M. De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res. 2011;18(1):53-63. NGS Service
68 2011 Differential Coexpression of Mex Efflux Pumps in a Clinical Strain of Metallo-β-lactamase-Producing Pseudomonas aeruginosa During the Stepwise Evolution of Resistance to Aminoglycosides Gene Expression
67 2011 Karim AF, Chandra P, Chopra A, et al. Express path analysis identifies a tyrosine kinase Src-centric network regulating divergent host responses to Mycobacterium tuberculosis infection. J Biol Chem. 2011;286(46):40307-19. Microarray Service
66 2011 Siddavattam D, Karegoudar TB, Mudde SK, et al. Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide. J Bacteriol. 2011;193(19):5598-9. NGS Service
65 2011 Avasthi TS, Kumar N, Baddam R, et al. Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India. J Bacteriol. 2011;193(16):4272-3. NGS Service
64 2011 Avasthi TS, Devi SH, Taylor TD, et al. Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient. J Bacteriol. 2011;193(13):3385-6. NGS Service
63 2011 Hendre PS, Kamalakannan R, Varghese M. High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform. Plant Biotechnol J. 2012;10(6):646-56. NGS Service
62 2011 Shang S, Harton M, Tamayo MH, et al. Increased Foxp3 expression in guinea pigs infected with W-Beijing strains of M. tuberculosis. Tuberculosis (Edinb). 2011;91(5):378-85. E Array Design
61 2011 Paranjape AN, Mandal T, Mukherjee G, Kumar MV, Sengupta K, Rangarajan A. Introduction of SV40ER and hTERT into mammospheres generates breast cancer cells with stem cell properties. Oncogene. 2012;31(15):1896-909.