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KMT1 family methyltransferases regulate heterochromatin–nuclear periphery tethering via histone and non-histone protein methylation Publication: EMBO Reports (2019) Authors: Radhika Arasala Rao , Alhad Ashok Ketkar, Neelam Kedia, Vignesh K Krishnamoorthy, Vairavan Lakshmanan, Pankaj Kumar , Abhishek Mohanty , Shilpa Dilip Kumar , Sufi O Raja , Akash Gulyani , Chandra Prakash Chaturvedi , Marjorie Brand ,Dasaradhi Palakodeti & Shravanti Rampalli February 12, 2019
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481
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Transcriptome profiling reveals genetic basis of disease resistance against Corynespora cassiicola in rubber tree (Hevea brasiliensis) Publication: Current Plant Biology
Publisher: Elsevier. February 24, 2019
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480
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2019
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Circular RNA Profiling by Illumina Sequencing via Template-Dependent Multiple Displacement Amplification Authors: Ashirbad Guria,Kavitha Velayudha Vimala Kumar,1 Nagesh Srikakulam, Anakha Krishnamma,Saibal Chanda, Satyam Sharma,Xiaofeng Fan, and Gopal Pandi, Journal: BioMed Research International
Volume 2019, Article ID 2756516, 12 pages
January 28, 2019
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2019
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Next-Generation Sequencing Reveals the Role of Epigallocatechin-3-Gallate in Regulating Putative Novel and Known microRNAs Which Target the MAPK Pathway in Non-Small-Cell Lung Cancer A549 Cells Authors: Vaishali Bhardwaj and Abul Kalam Azad Mandal Journal: Molecules 2019
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2019
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Genome‐wide analysis reveals miR‐3184‐5p and miR‐181c‐3p as a critical regulator for adipocytes‐associated breast cancer Authors: Dheeran Rajarajan Sweetha Selvarajan Mamilla R. Charan Raja Santanu Kar Mahapatra Ravi Kasiappan January 17, 2019 Publication: PNAS
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2019
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A SIR-independent role for cohesin in subtelomeric silencing and organization Authors: Deepash Kothiwala and Shikha Lalorayaa Publication: PNAS
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476
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2019
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Identification and expression profiling of miRNAs in two color variants of carrot (Daucus carota L.) using deep sequencing
Authors:Bhavana Bhan, Archana Koul, Deepak Sharma, Malik Muzafar Manzoor, Sanjana Kaul, Suphla Gupta, Manoj K. Dhar
Publication: Plos One
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475
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2019
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Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane
Authors: Dyfed Lloyd Evans, Shailesh V. Joshi and Jianping Wang
Journal: BMC Evolutionary Biology2019 19:33
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474
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2018
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Deepika Pandey Tiwari, Poonam Mishra Chatterjee, Harish Rotti, Bipin Chand, Ritu Raval, Ashok Kumar Dubey; Expression dynamics of the poly-γ-glutamic acid biosynthesis genes of Bacillus subtilis in response to glucose and glutamic acid-A pilot study, FEMS Microbiology Letters, , fny248, https://doi.org/10.1093/femsle/fny248
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Nimmy Mohan, Vikas Kumar, Divya T. Kandala, Chandrasekharan C. Kartha, Rakesh S. Laishram, A Splicing-Independent Function of RBM10 Controls Specific 3′ UTR Processing to Regulate Cardiac Hypertrophy, Cell Reports, Volume 24, Issue 13, September 2018, Pages 3539-3553
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2018
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Ahmed A, Adiga V, Nayak S, Uday Kumar JAJ, Dhar C, et al. (2018) Circulating HLA-DR+CD4+ effector memory T cells resistant to CCR5 and PD-L1 mediated suppression compromise regulatory T cell function in tuberculosis. PLOS Pathogens 14(9):e1007289. https://doi.org/10.1371/journal.ppat.1007289
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2018
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Anand, Atul, Jayaramaiah, Ramesha H., Beedkar, Supriya D., Dholakia, Bhushan B., Lavhale, Santosh G., Punekar, Sachin A., Gade, Wasudeo N., Thulasiram, Hirekodathakallu V., Giri, Ashok P. Terpene profiling, transcriptome analysis and characterization of cis-β-terpineol synthase from Ocimum. Physiology and Molecular Biology of Plants. 0974-0430. October 2018. https://doi.org/10.1007/s12298-018-0612-6
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2018
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Shantanu Kundu, Vikas Kumar, Kaomud Tyagi, Rajasree Chakraborty, Iftikar Rahaman, Kailash Chandra. Complete mitochondrial genome of Indian tent turtle,Pangshura tentoria and comparative mitochondriomics. PeerJ Preprints. September 2018. https://doi.org/10.7287/peerj.preprints.27202v1
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469
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2018
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Mondal, Tapan Kumar, Rawal, Hukam Chand, Chowrasia, Soni, Varshney, Deepti, Panda, Alok Kumar, Mazumdar, Abhishek, Kaur, Harmeet, Gaikwad, Kishor, Sharma, Tilak Raj, Singh, Nagendra Kumar. September 2018. Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes. Scientific Reports. 13698 VL. 2045-2322. https://doi.org/10.1038/s41598-018-31518-y
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2018
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Ondara Zablon Kerima, Pathappa Niranjana, Vinay Kumar B.S., Rajeshwari Ramachandrappa, Sharanappa Puttappa, Yadavalli Lalitha, Sushil K.Jalali, Chandish R.Ballal, Hirekodathakallu V.Thulasiram. De novo transcriptome analysis of the egg parasitoid Trichogramma chilonis Ishii (Hymenoptera: Trichogrammatidae): A biological control agent. Gene Reports. Volume 13, December 2018, Pages 115-129
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467
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2018
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Sowmya Handenahally Reddy Sumanth Kumar Kambalimath Rajesh Kumar Singhal Manjunath K Chikkakariyappa Raveendran Muthurajan Mavinahalli P Rajanna Rohini Sreevathsa Amitha Mithra Sevanthi Trilochan Mohapatra Sarala Neelamraju Viswanathan Chinnuswamy S Gopal Krishnan Ashok K Singh Nagendra K Singh Rameshwar P Sharma Sreeman M Sheshshayee. Allele specific analysis of single parent backcross population identifies HOX10 transcription factor as a candidate gene regulating rice root growth. 03 September 2018. https://doi.org/10.1111/ppl.12826
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2018
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Nair, Raji R. Madiwale, Shreyas V. Saini, Deepak Kumar, August 2018. Clampdown of inflammation in aging and anticancer therapies by limiting upregulation and activation of GPCR, CXCR4. npj Aging and Mechanisms of Disease. 2056-3973. https://doi.org/10.1038/s41514-018-0028-0
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2018
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Manoharan Shankar, Anbazhagan Mageswari, Chandrasekaran Suganthi, Paramasamy Gunasekaran, Kodiveri M. Gothandam, Sivashanmugam Karthikeyan. Genome Sequence of a Moderately Halophilic Bacillus cereus Strain, TS2, Isolated from Saltern Sediments. Microbiol Res Announc Aug 2018, 7 (6) e00873-18; DOI: 10.1128/MRA.00873-18
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2018
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Vishal Singh Somvanshi, Madhura Tathode, Rohit Nandan Shukla, Uma Rao, Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, Meloidogyne graminicola. Journal of Nematology. VOLUME 50 , ISSUE 2 , ISSN (Online) , DOI: 10.21307/jofnem-2018-018, September 2018. The Society of Nematologists
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Usha R. Dutta, Sudha N. Rao, Vijaya Kumar Pidugu, Vineeth V.S., Amrita Bhattacherjee, Aneek Das Bhowmik, Sathish K. Ramaswamy, Kumar Gautam Singh, Ashwin Dalal, Breakpoint mapping of a novel de novo translocation t(X;20)(q11.1;p13) by positional cloning and long read sequencing, Genomics, 2018, https://doi.org/10.1016/j.ygeno.2018.07.005.
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Varudkar A, Ramakrishnan U. Gut microflora may facilitate adaptation to anthropic habitat: A comparative study in Rattus. Ecol Evol. 2018;8:6463–6472. https://doi.org/10.1002/ece3.4040
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2018
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Gundu H R. Cellular and Molecular Medicine Approaches to Therapy. Developments Clin Med Pathol. 1(3). DCMP.000511.2018.
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2018
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Madhu Choudhary, Parbodh C. Sharma, Hanuman S. Jat, Abhinandita Dash, Balaji Rajashekar, Andrew J. McDonald, Mangi L. Jat, Soil bacterial diversity under conservation agriculture-based cereal systems in Indo-Gangetic Plains, 3 Biotech (2018) 8: 304. https://doi.org/10.1007/s13205-018-1317-9
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2018
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Isha Pandey, Ramandeep Kaur, Amit Kumar Subudhi, P.A Boopathi, Raja C. Mugasimangalam, Sudha N. Rao, Mohammed Aiyaz, Sanjay Kochar, Dhanpat Kochar, Ashis Das, A tiling array-based comparative genomic hybridization approach to predict copy number variations between Plasmodium falciparum field isolates from the Indian Sub-continent [version 1; referees: awaiting peer review] F1000Research 2018, 7:1033 (doi: 10.12688/f1000research.14599.1)
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2018
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Suganthi C, Mageswari A, Shankar M, Gothandam KM, Karthikeyan S. 2018. Genome sequence of Bacillus vallismortis TD3, a salt-tolerant strain isolated from the sediments of a solar saltern in Tamil Nadu, India. Microbiol Resour Announc 7:e00817-18. https://doi.org/10.1128/MRA.00817-18.
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457
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2018
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Remya Nair, Nitesh K. Khandelwal, Md. Shariq, Archana K. Redhu, Naseem A. Gaur, Shamim Shaikh, Rajendra Prasad, Identification of genome-wide binding sites of heat shock factor 1, Hsf1, under basal conditions in the human pathogenic yeast, Candida albicans, AMB Expr (2018) 8: 116. https://doi.org/10.1186/s13568-018-0647-7
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456
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2018
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Vidya, S., Kumar, H. S. Vijay, Bhatt, R, Laxman, R. H, Ravishankar, K. V., Transcriptional profiling and genes involved in acquired thermotolerance in Banana: a non-model crop, August 2018, Scientific Reports, 10683, Volume 8IS, 2045-2322, 10.1038/s41598-018-27820-4
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455
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2018
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Singh, S.K., Dhawan, S.S., Lal, R.K. et al. Biochemical characterization and spatio-temporal analysis of the putative l-DOPA pathway in Mucuna pruriens Planta (2018). https://doi.org/10.1007/s00425-018-2978-7
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454
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2018
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Vishal Singh Somvanshi, Madhura Tathode, Rohit Nandan Shukla, Uma Rao, Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, Meloidogyne graminicola, Journal of Nematology. VOLUME 50 , ISSN (Online) , DOI: 10.21307/jofnem-2018-018, July 2018 © 2018.© The Society of Nematologists
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2018
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Asmaa Missoum, DNA Microarray and Bioinformatics Technologies: A mini-review, Proceedings of the Nature Research Society, 2, 02010 (2018). doi: 10.11605/j.pnrs.201802010
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Microarray Services
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452
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2018
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Sundaresan, Srivignesh, Philosoph Hadas, Sonia Ma, Chao - Jiang, Cai-Zhong, Riov, Joseph, Mugasimangalam, Raja, Kochanek, Betina, Salim, Shoshana, Reid, Michael S., Meir, Shimon, The Tomato Hybrid Proline-rich Protein regulates the abscission zone competence to respond to ethylene signals, Horticulture Research 2018, Volume 5, Issue 1, Pages 2052-7276
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451
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2018
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Ramasamy Yasodha, Ramesh Vasudeva, Swathi Balakrishnan, Ambothi Rathnasamy Sakthi, Nicodemus Abel, Nagarajan Binai, Balaji Rajashekar, Vijay Kumar Waman Bachpai, Chandrasekhara Pillai, Suma Arun Dev; Draft genome of a high value tropical timber tree, Teak (Tectona grandis L. f): insights into SSR diversity, phylogeny and conservation, May 2018, DNA Research
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450
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2018
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Chandreyee Datta Arijita Subuddhi Manish Kumar Thurbu Tshering Lepcha Sohini Chakraborty Kuladip Jana Zhumur Ghosh Asish Kumar Mukhopadhyay Joyoti Basu Manikuntala Kundu, Genome‐wide mRNA–miRNA profiling uncovers a role of the microRNA miR‐29b‐1‐5p/PHLPP1 signalling pathway in Helicobacter pylori‐driven matrix metalloproteinase production in gastric epithelial cells, Cellular Microbiology, May 2018
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MicroArray Analysis
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449
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2018
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Mohammad Rumman, Abhijit Majumder, Linda Harkness, Balu Venugopal, M.B. Vinay, Malini S. Pillai, Moustapha Kassem, Jyotsna Dhawan, Induction of quiescence (G0) in bone marrow stromal stem cells enhances their stem cell characteristics, Stem Cell Research, Volume 30, 2018, Pages 69-80, ISSN 1873-5061
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448
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2018
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Sundaresha S., Sharma Sanjeev, Shandil Rajesh K., Sharma Sadhana, Thakur Vandana, Bhardwaj Vinay, Kaushik Surinder K., Singh Bir Pal, Chakrabarti Swarup K. (2018) An insight into the downstream analysis of RB gene in F1 RB potato lines imparting field resistance to late blight. Functional Plant Biology
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447
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2018
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Roopali Pradhan, Devika Ranade, Kundan Sengupta; Emerin modulates spatial organization of chromosome territories in cells on softer matrices (April 2018), Nucleic Acids Research, gky288,
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446
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2018
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Himabindu Kudapa Vanika Garg Annapurna Chitikineni Rajeev K. Varshney. (April 2018) The RNA‐Seq based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio‐temporal changes associated with growth and development. Plant Cell Environment, https://doi.org/10.1111/pce.13210
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445
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2018
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Tandon D, Haque MM, R. S, Shaikh S, P. S, Dubey AK, et al. (2018) A snapshot of gut microbiota of an adult urban population from Western region of India. PLoS ONE 13(4):e0195643. 10.1371/journal.pone.0195643
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444
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2018
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Genome sequence and comparative analysis of Bacillus cereus BC04, reveals genetic diversity and alterations for antimicrobial resistance. (2018) Srinivasan, V.B., Angrasan, M., Chandel, N. et al. Funct Integr Genomics (2018). Springer Berlin Heidelberg 1438-793X. https://doi.org/10.1007/s10142-018-0600-5
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2018
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Suresh H. Basagoudanavar, Madhusudan Hosamani, R. P. Tamil Selvan, B. P. Sreenivasa, Aniket Sanyal, R. Venkataramanan (April 2018). Host serum microRNA profiling during the early stage of foot-and-mouth disease virus infection. Archives of Virology pp 1–9.
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442
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2018
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Nutan Thakur, Harish Changotra, Neelam Grover, Jitendraa Vashistt (June 2018). Elucidation of bacterial species during childhood diarrhea through 16S rRNA Illumina Miseq approach. Meta Gene, Volume 16, Pages 234-240
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2018
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S. Wajih A. Naqvi, Phyllis Lam, Gayatree Narvenkar, Amit Sarkar, Hema Naik, Anil Pratihary, Damodar M. Shenoy, Mangesh Gauns, Siby Kurian, Samir Damare, Manon Duret, Gaute Lavik & Marcel M. M. Kuypers (February 2018). Methane stimulates massive nitrogen loss from freshwater reservoirs in India. Nature Communications Article number: 1265.
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440
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2018
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Nizar Jamal Haddad, Noureddine Adjlane, Deepti Saini, Athul Menon, Venkatesh Krishnamurthy, Devan Jonklaas J., Paul Tomkins, Wahida Loucif‐Ayad, Lisa Horth (March 2018). Whole‐genome sequencing of north African honey bee Apis mellifera intermissa to assess its beneficial traits. Entomological Research.
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439
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2018
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Erika Salavarría, Sujay Paul, Patricia Gil‑Kodaka, Gretty K. Villena. ( April 2018). First global transcriptome analysis of brown algae Macrocystis integrifolia (Phaeophyceae) under marine intertidal conditions. 3Biotech, Vol 8:185
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438
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2018
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Mubashshir Rasheed, Anamika Battu and Rupinder Kaur. Aspartyl proteases in Candida glabrata are required for suppression of the host innate immune response. JBC (2018)
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437
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2018
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Vikas Yadav, Sheng Sun, R. Blake Billmyre, Bhagya C. Thimmappa, Terrance Shea, Robert Lintner, Guus Bakkeren, Christina A. Cuomo, Joseph Heitman, Kaustuv Sanyal. RNAi is a critical determinant of centromere evolution in closely related fungi. PNAS (2018)
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436
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2018
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Shankha Subhra Chatterjee, Mayukh Biswas, Liberalis Debraj Boila, Debasis Banerjee and Amitava Sengupta. SMARCB1 Deficiency Integrates Epigenetic Signals to Oncogenic Gene Expression Program Maintenance in Human Acute Myeloid Leukemia. Molecular Cancer Resarch (2018).
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435
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2018
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N. S. Subina, B. R. Thorat, Maria-Judith Gonsalves. Nitrification in intertidal sponge Cinachyrella cavernosa. Aquatic Ecology (2018)
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434
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2018
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M. B. Mohamed Sathik, Lisha P. Luke, Anantharamanan Rajamani, Linu Kuruvilla, K. V. Sumesh, Molly Thomas. De novo transcriptome analysis of abiotic stress-responsive transcripts of Hevea brasiliensis. Molecular Breeding (2018).
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433
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2018
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Divya Vashisth, Ritesh Kumar, Shubhra Rastogi, Vikas Kumar Patel, Alok Kalra, Madan Mohan Gupta, Anil Kumar Gupta & Ajit Kumar Shasany. Transcriptome changes induced by abiotic stresses in Artemisia annua. Scientific Reports (2018).
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432
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2018
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Pankaj Kumar Singh, Sayak Ganguli, Amita Pal. Screening and Identification of putative long non coding RNAs from transcriptome data of a high yielding blackgram (Vigna mungo), Cv. T9. Data in Brief. 2018
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MicroArray Services
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431
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2018
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Crystal A. Shanley, Marcela I. Henao-Tamayo, Chand Bipin, Raja Mugasimangalam, Deepshika Verma, Diane J. Ordway, Elizabeth M. Streicher, Ian M. Orme. Biology of clinical strains of Mycobacterium tuberculosis with varying levels of transmission. Tuberculosis Journal (2018).
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430
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2018
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Mallika Lavania, Itu Singh, Ravindra P Turankar, Anuj Kumar Gupta, Madhvi Ahuja, Vinay Pathak, and Utpal Sengupta. Enriched whole genome sequencing identified compensatory mutations in the RNA polymerase gene of rifampicin-resistant Mycobacterium leprae strains. Infection and Drug Resistance (2018).
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429
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2018
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Lalit Kumar, Shamsuzzama, Pooja Jadiya, Rizwanul Haque, Shikha Shukla, Aamir Nazir. Functional Characterization of Novel Circular RNA Molecule, circzip-2 and Its Synthesizing Gene zip-2 in C. elegans Model of Parkinson’s Disease. Molecular Neurobiology. (2018)
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428
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2018
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Samantha Leong, Yue Zhao, Noyal M. Joseph, Natasha S. Hochberg, Sonali Sarkar, Jane Pleskunas, David Hom, Subitha Lakshminarayanan, C. Robert Horsburgh Jr., Gautam Roy, Jerrold J. Ellner, W. Evan Johnson, Padmini Salgame. Existing blood transcriptional classifiers accurately discriminate active tuberculosis from latent infection in individuals from south India. Tuberculosis. (2018)
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427
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2018
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Singh, Garima; Roy, Jyoti; Rout, Pratiti; Mallick, Bibekanand. Genome-wide profiling of the PIWI-interacting RNA-mRNA regulatory networks in epithelial ovarian cancers. Plos One (2018)
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426
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2017
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Sanjeev Kumar Shukla, Shubhra Shukla, Rehan Khan, Anuj Ahuja, Lakshya Veer Singh, Nitin M. Kamble, Anupam Dhasmana, Naveen Sharma, Bipin Chand, Ajay Vir Singh. Pathway analysis of differentially expressed genes in Mycobacterium bovis challenged bovine macrophages (2017)
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Microarray Services
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425
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2017
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Ella, Krishna Murthy Kandaswamy, Sumathy Inactivated chikungunya viruses (CHIKV) comprising an E1-K211E mutation. FPO (2017)
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424
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2017
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K. Polavarapu, , A. Nalini, S. MK, S. Narayan Rao, V. Preethish-Kumar, D. Sekar, V. Sundar, S. Vengalil, S. Nashi, V. Krishnamurthy. A next generation sequencing based mutational analysis in Duchenne and Becker muscular dystrophy. Journal of the Neurological Sciences (2017).
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423
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2017
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Jyoti Kureel, Aijaz A. John, Ravi Prakash, Divya Singh. MiR 376c inhibits osteoblastogenesis by targeting Wnt3 and ARF-GEF-1 -facilitated augmentation of beta-catenin transactivation. Journal of Cellular Biochemistry (2017).
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Microarray Services
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422
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2017
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Soumyadev Sarkar, Somnath Chakravorty, Avishek Mukherjee, Debanjana Bhattacharya, Semantee Bhattacharya, Ratan Gachhu. De novo RNA-Seq based transcriptome analysis of Papiliotrema laurentii strain RY1 under nitrogen starvation. Gene (2017).
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421
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2017
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Rathinasamy Karpagam, Kalimuthu Jawaharraja, Balasubramaniem Ashokkumar, Jayavel Sridhar, Perumal Varalakshmi, Unraveling the lipid and pigment biosynthesis in Coelastrella sp. M-60: Genomics-enabled transcript profiling. Algal Research (2018).
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420
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2017
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G Kiran Kumar Reddy, Y V Nancharaiah. Sustainable bioreduction of toxic levels of chromate in a denitrifying granular sludge reactor. Environmental Science and Pollution Research (2017).
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419
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2017
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P.A. Sutton, P.V. Jithesh1, R.P. Jones, J.P. Evans, D. Vimalachandran, H.Z. Malik, B.K. Park, C.E. Goldring, D.H. Palmer, N.R. Kitteringham. Exome sequencing of synchronously resected primary colorectal tumours and colorectal liver metastases to inform oncosurgical management. The Journal of Cancer Surgery (2017).
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418
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2017
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Poulomi Banerjee, Harshini Surendran, Kapil Bharti, Kaoru Morishita, Anurag Varshney, Rajarshi Pal. Long non-coding RNA RP11-380D23.2 drives distal-proximal patterning of the lung by regulating PITX2 expression. Stem Cells (2017).
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Microarray Services
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417
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2017
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Deepika Singh, Debajyoti Kabiraj, Pragya Sharma, Hasnahana Chetia, Ponnala Vimal Mosahari, Kartik Neog, Utpal Bora. The mitochondrial genome of Muga silkworm (Antheraea assamensis) and its comparative analysis with other lepidopteran insects. PLoS ONE (2017).
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416
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2017
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Dillon F. Da Fonte, Christopher J. Martyniuk, Lei Xing, Adrian Pelin, Nicolas Corradi,
Wei Hu & Vance L. Trudeau. Secretoneurin A regulates neurogenic and inflammatory transcriptional networks in goldfish (Carassius auratus) radial glia. Nature's Scientific Reports (2017).
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415
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2017
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Jyoti Kode, Navin Khattry, Ashish Bakshi, Vasanti Amrutkar, Bhausaheb Bagal, Rohini Karandikar, Pallavi Rane, Nobutaka Fujii, Shubhada Chiplunkar. Study of stem cell homing & self-renewal marker gene profile of ex vivo expanded human CD34+ cells manipulated with a mixture of cytokines & stromal cell-derived factor 1. Indian Journal of Medical Research (2017).
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414
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2017
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Tarique Anwar, Bijoya Sen, Savera Aggarwal, Rhisita Nath, Ajay Katoch, Mohamed Aiyaz, Nirupma Trehanpati, Sanjeev Khosla, Gayatri Ramakrishnan. Differentially regulated gene expression in quiescence vs. senescence and identification of ARID5A as a quiescence associated marker. Journal of Cellular physiology (2017).
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413
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2017
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Rama Chandra Laha, Surajit De Mandal, Lalhmanghai Ralte, Laldinfeli Ralte, Nachimuthu Senthil Kumar, Guruswami Gurusubramanian, Ramalingam Satishkumar, Raja Mugasimangalam and Nagesh Aswathnarayana Kuravadi. Correction to: Meta-barcoding in combination with palynological inference is a potent diagnostic marker for honey floral composition. AMB Express (2017)
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412
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2017
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Susheel Kumar Singh, Sunita Singh Dhawan. Analyzing trichomes and spatio-temporal expression of a cysteine protease gene Mucunain in Mucuna pruriens L. (DC). Protoplasma (2017).
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411
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2017
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Kuppusamy Sivasankaran, Pratheesh Mathew, Sekar Anand, Stanislaus Antony Ceasar, Soosaimanikam Mariapackiam, Savarimuthu Ignacimuthu. Complete mitochondrial genome sequence of fruit-piercing moth Eudocima phalonia (Linnaeus, 1763) (Lepidoptera: Noctuoidea). Genomics Data (2017).
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410
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2017
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Tapan Kumar Mondal, Hukam Chand Rawal, Kishor Gaikwad, Tilak Raj Sharma, Nagendra Kumar Singh. First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza. (2017).
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Nanopore Sequencing
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409
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2017
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Udita Chandra, Aarti Yadav, Devanand Kumar, Swati Saha. Cell cycle stage-specific transcriptional activation of cyclins mediated by HAT2- dependant H4K10 acetylation of promoters in Leishmania donovani. PLoS Pathog (2017).
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Microarray services
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408
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2017
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Gursharan Kaur, Vineet Kumar, Amit Arora, Ajay Tomar, Ashish, Runa Sur & Dipak Dutta. Affected energy metabolism under manganese stress governs cellular toxicity. Natures Scientific Reports (2017).
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Microarray services
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407
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2017
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Surender Kumar, BL Subbarao & Vipin Hallan. Molecular characterization of emaraviruses associated with Pigeonpea sterility mosaic disease. Natures Scientific Reports (2017).
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NGS Services
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406
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2017
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Nizar Haddad, Noureddine Adjlane, Wahida Loucif-Ayad, Abhinandita Dash, S. Naganeeswaran, Balaji Rajashekar, Kosai Ali Ahmed Al-Nakeeb, Thomas Sicheritz-Pontén. Mitochondrial genome of the North African Sahara Honeybee, Apis mellifera sahariensis (Hymenoptera: Apidae). Mitochondrial Dna Part B (2017).
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NGS Services
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405
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2017
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Sumit Kumar, Rachapudi Venkata Sreeharsha, Shalini Mudalkar, Prasad M. Sarashetti & Attipalli Ramachandra Reddy. Molecular insights into photosynthesis and carbohydrate metabolism in Jatropha curcas grown under elevated CO2 using transcriptome sequencing and assembly. Natures Scientific Reports (2017).
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NGS Services
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404
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2017
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M. Sarvajith, G. Kiran Kumar Reddy, Y.V. Nancharaiah. Textile dye biodecolourization and ammonium removal over nitrite in aerobic granular sludge sequencing batch reactors. Journal of Hazardous Materials (2017).
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NGS Services
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403
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2017
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Shumei Chia, Joo-Leng Low, Xiaoqian Zhang, Xue-Lin Kwang, Fui-Teen Chong, Ankur Sharma, Denis Bertrand, Shen Yon Toh, Hui-Sun Leong, Matan T. Thangavelu, Jacqueline S. G. Hwang, Kok-Hing Lim, Thakshayeni Skanthakumar, Hiang-Khoon Tan, Yan Su, Siang Hui Choo, Hannes Hentze, Iain B. H. Tan, Alexander Lezhava, Patrick Tan, Daniel S. W. Tan, Giridharan Periyasamy, Judice L. Y. Koh, N. Gopalakrishna Iyer & Ramanuj DasGupta. Phenotype-driven precision oncology as a guide for clinical decisions one patient at a time. Nature Communications (2017).
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Microarray services
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402
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2017
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R. V. Sreedhar, P. Prasad, L. Prasanna Anjaneya Reddy, Ram Rajasekharan & Malathi Srinivasan. Unravelling a stearidonic acid - rich triacylglycerol biosynthetic pathway in the developing seeds of Buglossoides arvensis: A transcriptomic landscape. Natures Scientific Reports (2017).
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NGS Services
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401
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2017
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Sana Parveen, Dhiviya Vedagiri, Hitha Gopalan Nair, Haripriya Parthasarathy, and Krishnan Harinivas Harshan. Unconventional MAPK-GSK-3β Pathway Behind Atypical Epithelial-Mesenchymal Transition In Hepatocellular Carcinoma. Natures Scientific Reports (2017).
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Microarray services
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400
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2017
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Dhiru Bansal, Jahnavi Kulkarni, Kavana Nadahalli, Vairavan Lakshmanan, Srikar Krishna, Vidyanand Sasidharan, Jini Geo, Shilpa Dilipkumar, Renu Pasricha, Akash Gulyani, Srikala Raghavan and Dasaradhi Palakodeti. Cytoplasmic poly (A)-binding protein critically regulates epidermal maintenance and turnover in the planarian Schmidtea mediterranea. The Company of Biologists Ltd|Development (2017).
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NGS Services
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399
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2017
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Abhishek Ojha, Deepak Kumar Sinha, A.P. Padmakumari, J.S. Bentur and Suresh Nair. Bacterial Community Structure in the Asian Rice Gall Midge Reveals a Varied Microbiome Rich in Proteobacteria. Nature Scientific Reports (2017)
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NGS Services
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398
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2017
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Rajeswara Babu Mythri, N. Raghunath, Santosh C. Narwade, M.D. Pandareesh, K. Rajesh Sabitha, Mohamad Aiyaz, Bipin Chand, Manas Sule, Krittika Ghosh, Senthil Kumar, M.S. Bhagya, Soundarya Soundararajan, Phalguni Anand Alladi, Meera Purushottam, Narayanappa Gayathri, Deepti D. Deobagkar, T. Rao Laxmi and Muchukunte Mukunda Srinivas Bharath. Manganese and 1-methyl-4-phenylpyridinium (MPP+) induced neurotoxicity indicate differences in morphological, electrophysiological and genome-wide alterations: Implications for idiopathic Parkinson's disease. Journal of Neurochemistry (2017).
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Microarray services
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397
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2017
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Swati ShreePadhi, Souvick Roy, Madhabananda Kar, Arka Saha, Shomereeta Roy, Amit Adhya, Manas Baisakh, Birendranath Banerjee. Role of CDKN2A/p16 expression in the prognostication of oral squamous cell carcinoma. Oral Oncology (2017).
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Microarray Services
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396
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2017
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Archita Srivastava, Shabnam Sircaik, Farha Husain, Edwina Thomas, Shivani Ror, Sumit Rastogi, Darakshan Alim, Priyanka Bapat, David R. Andes, Clarissa J. Nobile, Sneh L. Panwar. Distinct roles of the 7-transmembrane receptor protein Rta3 in regulating the asymmetric distribution of phosphatidylcholine across the plasma membrane and biofilm formation in Candida albicans. cellular microbiology (2017)
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Microarray services
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395
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2017
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Aditi Madan, Divesh Thimmaiya, Ari Franco-Cea, Mohammed Aiyaz, Prabodh Kumar, John C. Sparrow, Upendra Nongthomba.Transcriptome analysis of IFM-specific actin and myosin nulls in Drosophila melanogaster unravels lesion-specific expression blueprints across muscle mutations. j.gene (2017).
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Microarray services
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394
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2017
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Gowthaman Govindarajan, Saumi Mathews, Karthik Srinivasan, Kim Ramasamy, Sundaresan Periasamy. Establishment of human retinal mitoscriptome gene expression signature for diabetic retinopathy using cadaver eyes. Mitochondrion (2017)
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Microarray services
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393
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2017
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Sujay Paul, Yvette Ludena, Gretty K. Villena, Fengan Yu, David H. Sherman and Marcel Gutierrez-Correa. High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864. Standards in Genomic Sciences (2017).
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NGS Services
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392
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2017
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Balachandran Karpaga Raja Sundari, Srivani Telapolu, Bilikere S. Dwarakanath, Sadras. P. Thyagarajan. Cytotoxic and Antioxidant Effects in Various Tissue Extracts of Plumbago zeylanica: Implications for Anticancer Potential. Pharmacogn J (2017).
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NGS Services
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391
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2017
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Vasudevan Prabhakaran1, Douglas A. Drevets, Govindan Ramajayam, Josephine J. Manoj, Michael P. Anderson, Jay S. Hanas4, Vedantam Rajshekhar, Anna Oommen, Helene Carabin.Comparison of monocyte gene expression among patients with neurocysticercosisassociated epilepsy, Idiopathic Epilepsy and idiopathic headaches in India. PLoS Negl Trop Dis (2017).
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Microarray services
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390
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2017
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Sumanti Gupt, Anirban Bhar, Moniya Chatterjee, Amartya Ghosh, Sampa Das.Transcriptomic dissection reveals wide spread differential expression in chickpea during early time points of Fusarium oxysporum f. sp. ciceri Race 1 attack. PLoS ONE (2017).
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NGS Services
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389
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2017
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Modhumita Ghosh Dasgupta, Veeramuthu Dharanishanthi. Identification of PEG-induced water stress responsive transcripts using co-expression network in Eucalyptus grandis. Gene (2017).
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Microarray services
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388
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2017
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Deepti Sarkar, Ranjan Kumar Maji, Sayani Dey, Arijita Sarkar, Zhumur Ghosh, Pallob Kundu. Integrated miRNA and mRNA expression profiling reveals the response regulators of a susceptible tomato cultivar to early blight disease. DNA Research (2017).
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NGS Services
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387
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2017
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Gajendra Singh Jeena, Shahnoor Fatima, Pragya Tripathi, Swati Upadhyay and Rakesh Kumar Shukla.Comparative transcriptome analysis of shoot and root tissue of Bacopa monnieri identifies potential genes related to triterpenoid saponin biosynthesis. BMC Genomics (2017).
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NGS Services
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386
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2017
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Indraneel Mittra, Urmila Samant, Suvarna Sharma, Gorantla V Raghuram, Tannistha Saha, Pritishkumar Tidke, Namrata Pancholi, Deepika Gupta, Preeti Prasannan, Ashwini Gaikwad, Nilesh Gardi, Rohan Chaubal, Pawan Upadhyay, Kavita Pal, Bhagyeshri Rane, Alfina Shaikh, Sameer Salunkhe, Shilpee Dutt, Pradyumna K Mishra, Naveen K Khare, Naveen K Nair & Amit Dutt. Cell-free chromatin from dying cancer cells integrate into genomes of bystander healthy cells to induce DNA damage and inflammation. Cell Death Discovery (2017).
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Microarray Services
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385
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2017
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Shailaja Hittalmani†Email author, H. B. Mahesh†Email author, Meghana Deepak Shirke, Hanamareddy Biradar, Govindareddy Uday, Y. R. Aruna, H. C. Lohithaswa and A. Mohanrao. Genome and Transcriptome sequence of Finger millet (Eleusine coracana (L.) Gaertn.) provides insights into drought tolerance and nutraceutical properties. BMC Genomics (2017).
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NGS Services
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384
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2017
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Biswal D, Konhar R, Debnath M, Parameswaran S, Sundar D, Tandon P. Chloroplast Genome
Sequence Annotation of Dendrobium nobile (Asparagales: Orchidaceae), an Endangered Medicinal
Orchid from Northeast India. PLOS Currents Tree of Life (2017).
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NGS Services
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383
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2017
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M.K. Rasheeda, Vijaya Raghavan Rangamaran, Senthilkumar Srinivasan, Sendhil Kumar Ramaiah, Rajaprabhu Gunasekaran, Santhanakumar Jaypal, Dharani Gopal, Kirubagaran Ramalingam. Comparative profiling of microbial community of three economically important fishes reared in sea cages under tropical offshore environment. Marine Genomics (2017).
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NGS Services
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382
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2017
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Krzysztof Krawczyk, Barbara Uszczyńska-Ratajczak, Alicja Majewska, Natasza Borodynko-Filas. DNA microarray-based detection and identification of bacterial and viral pathogens of maize. Journal of Plant Diseases and Protection(2017).
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Microarray services
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381
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2017
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K. Sumathy, Bharathi Kulkarni, Ravi Kumar Gondu, Sampath Kumar Ponnuru, Nagaraju Bonguram, Rakesh Eligeti, Sindhuja Gadiyaram, Usha Praturi, Bhushan Chougule, Latha Karunakaran & Krishna M. Ella. Protective efficacy of Zika Vaccine in AG129 mouse model. natures Scientific report (2017).
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NGS Services
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380
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2017
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Sujay Paul, Angel Zhang, Yvette Ludeña, Gretty K. Villena, Fengan Yu, David H. Sherman, Marcel Gutiérrez-Correa. Insights from the genome of a high alkaline cellulase producing Aspergillus fumigatus strain obtained from Peruvian Amazon rainforest.J.Jbiotech (2017).
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NGS Services
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379
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2017
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Mohd Shariq, Sanjiveeni Dhamgaye, Remya Nair, Neha Goyal, Vaibhav Jain, Arnab Mukhopadhyay, Alok K. Mondal, Gauranga Mukhopadhyay & Rajendra Prasad. The global regulator Ncb2 escapes from the core promoter and impacts transcription in response to drug stress in Candida albicans. Scientific Reports (2017).
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Microarray services
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378
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2017
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Chanchal Kumari, Tushar K. Dutta, Sonam Chaudhary, Prakash Banakar, Pradeep K. Papolu, Uma Rao. Molecular characterization of FMRFamide-like peptides in Meloidogyne graminicola and analysis of their knockdown effect on nematode infectivity. Gene (2017).
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NGS
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377
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2017
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Kavitha Velayudha Vimala Kumar, Nagesh Srikakulam, Priyavathi Padmanabhan and Gopal Pandi. Deciphering microRNAs and Their Associated Hairpin Precursors in a Non‐Model Plant, Abelmoschus esculentus. Non‐Coding RNA (2017).
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NGS Services
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376
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2017
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Tarsizio Chikaonda, Nelson Nguluwe, Brian Barnett, Runa H. Gokhale, Robert Krysiak, Isaac Thengolose, Nora E. Rosenberg, Christopher Stanley, James Mpunga, Irving F. Hoffman, Mina Hosseinipour, Lesley Scott, Wendy Stevens. Performance of Xpert® MTB/RIF among tuberculosis outpatients in Lilongwe, Malawi. African Journal of Laboratory Medicine (2017).
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NGS Services
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375
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2017
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Sakshi Dhingra Batra, Malobi Nandi, Kriti Sikri and Jaya Sivaswami Tyagi. Genome-wide expression profiling establishes novel modulatory roles of vitamin C in THP-1 human monocytic cell line. BMC Genomics (2017).
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Microarray services
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374
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2017
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Veena Kochat, Zaffar Equbal, Prakash Baligar, Vikash Kumar, Madhulika Srivastava, Asok Mukhopadhyay. JMJD3 aids in reprogramming of bone marrow progenitor cells to hepatic phenotype through epigenetic activation of hepatic transcription factors.PLoS ONE, (2017).
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Microarray services
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373
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2017
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Ravinder KumarAnil Kumar PinnakaBeena Krishnan.TfoI produced by Tepidimonas fonticaldi PL17, a moderate thermophilic bacterium, is an isoschizomer of MseI. Extremophiles(2017).
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NGS Services
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372
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2017
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Aurelien Ducat, Ludivine Doridot, Rosamaria Calicchio, Celine Méhats, Jean-Luc Vilotte, Johann Castille, Sandrine Barbaux, Betty Couderc, Sébastien Jacques, Franck Letourneur, Christophe Buffat, Fabien Le Grand, Paul Laissue, Francisco Miralles & Daniel Vaiman.Endothelial cell dysfunction and cardiac hypertrophy in the STOX1 model of preeclampsia. Scientific Reports (2016).
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NGS Services
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371
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2017
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Alivia Roy, Reetuparna Basak, Umesh Rai. De novo sequencing and comparative analysis of testicular transcriptome from different reproductive phases in freshwater spotted snakehead Channa punctatus. PLoS ONE (2017).
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NGS
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370
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2017
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Deepika Singh, Debajyoti Kabiraj, Hasnahana Chetia, Pragya Sharma, Kartik Neog, Utpal Bora. Complete mitochondrial genome of golden silk producer Antheraea assamensis and its comparative analysis with other lepidopteran insects. bioRxiv Preprint (2017).
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NGS Services
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369
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2017
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Atul Kumara, D. Jeya Sundara Sharmila, Sachidanand Singh. SVMRFE based approach for prediction of most discriminatory gene target for type II diabetes. Genomics Data (2017).
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Microarray services
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368
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2017
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Hasnahana Chetia, Debajyoti Kabiraj, Deepika Singh, Ponnala Vimal Mosahari, Suradip Das, Pragya Sharma, Kartik Neog, Swagata Sharma, P. Jayaprakash, Utpal Bora. De novo transcriptome of the muga silkworm, Antheraea assamensis (Helfer). Gene Journal (2017).
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NGS Services
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367
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2017
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Ahlfors, Jan-eric, El-ayoubi, Rouwayda. METHODS FOR REPROGRAMMING CELLS AND USES THEREOF. United States Patent Application 20170029783 (2017).
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Microarray services
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366
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2017
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Awanti Sambarey, Abhinandan Devaprasad, Priyanka Baloni, Madhulika Mishra, Abhilash Mohan, Priyanka Tyagi, Amit Singh,JS Akshata, Razia Sultana, Shashidhar Buggi and Nagasuma Chandra. Meta-analysis of host response networks identifies a common core in tuberculosis. npj Systems Biology and Applications (2017).
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Microarray services
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365
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2017
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Anirban Kundua, Sujay Paula, Avishek Dey, Amita Pal. High throughput sequencing reveals modulation of microRNAs in Vigna mungo upon Mungbean Yellow Mosaic India Virus inoculation highlighting stress regulation. Plant Science Journal (2017).
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NGS
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364
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2017
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Anirban Roychowdhury, Sudip Samadder, Pijush Das, Sapan Mandloi, Sankar Addya,
Chandraditya Chakraborty, Partha Sarathi Basud, Ranajit Mondal, Anup Roy, Saikat Chakrabarti,
Susanta Roychoudhury, Chinmay Kumar Panda.Integrative genomic and network analysis identified novel genes associated with the development of advanced cervical squamous cell carcinoma. Biochimica et Biophysica Acta (BBA) - General Subjects (2016).
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Microarray services
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363
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2017
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R.P. Singh, C.M. Shafeeque, S.K. Sharma, R. Singh, J. Mohan, K.V.H. Sastry, V.K. Saxena, P.A. Azeez. Chicken sperm transcriptome profiling by microarray analysis. Genome (2016).
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Microarray services
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362
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2017
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Jyoti Roy, Arijita Sarkar, Sibun Parida, Zhumur Ghosh and Bibekanand Mallick. Small RNA sequencing revealed dysregulated piRNAs in Alzheimer's disease and their probable role in pathogenesis. Mol. BioSyst (2017).
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NGS
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361
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2017
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Pooja Makwana, Appukuttan Nair R. Pradeep, Shambhavi P. Hungund, Kangaram M. Ponnuvel, Kanika Trivedy. The dipteran parasitoid Exorista bombycis induces pro- and anti-oxidative reactions in the silkworm Bombyx mori: Enzymatic and genetic analysis. Archives of Insect Biochemistry and Physiology (2017).
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Microarray services
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360
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2017
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Mulaka Maruthi, Dipti Singh, Segireddy Rameswara Reddy, Babu S Mastan, Satish Mishra and Kota Arun Kumar. Modulation of host cell SUMOylation facilitates efficient development of Plasmodium berghei and Toxoplasma gondii. cellular microbiology(2017).
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Microarray services
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359
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2017
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Faisal Mohammed Abdul Al-Nihmi,Surendra Kumar Kolli, Segireddy Rameswara Reddy, Babu S. Mastan, Jyothi Togiri, Mulaka Maruthi, Roshni Gupta, Puran Singh Sijwali, Satish Mishra & Kota Arun Kumar. A Novel and Conserved Plasmodium Sporozoite Membrane Protein SPELD is Required for Maturation of Exo-erythrocytic Forms. Scientific Reports (2017).
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Microarray services
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358
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2017
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Awanti Sambarey, Abhinandan Devaprasad, Abhilash Mohan, Asma Ahmed, Soumya Nayak, Soumya Swaminathan, George D’Souza, Anto Jesuraj, Chirag Dhar, Subash Babu, Annapurna Vykarnam, Nagasuma Chandra.Unbiased Identification of Blood-based Biomarkers for Pulmonary Tuberculosis by Modeling and Mining Molecular Interaction Networks. EBioMedicine, 2016.
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NGS
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357
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2017
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Manas Ranjan Sahoo, Swati Gaikwad, Deepak Khuperkar, Maitreyi Ashok, Mary Helen, Santosh Kumar Yadav, Aditi Singh, Indrasen Magre, Prachi Deshmukh, Supriya Dhanvijay, Pabitra Kumar Sahoo, Yogendra Ramtirtha, Mallur Srivatsan Madhusudhan, Pananghat Gayathri, Vasudevan Seshadri, Jomon Joseph. Nup358 binds to AGO proteins through its SUMO‐interacting motifs and promotes the association of target mRNA with miRISC. EMBO reports, 2016.Vol 35 Issue 24.
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NGS, Seq QC
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356
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2016
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Hickman, Oliver J, Smith, Richard A, Dasgupta, Prokar, Rao, Sudha Narayana, Nayak, Soumya, Sreenivasan, Shubha, Vyakarnam, Annapurna, Galustian, Christine, Expression of two WFDC1/ps20 isoforms in prostate stromal cells induces paracrine apoptosis through regulation of PTGS2/COX-2, British Journal Of Cancer, Volume 114, Page 1235, 10.1038/bjc.2016.91
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MicroArray Services
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355
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2016
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Choubey, A. & Rajam, M.V. (2016) Transcriptome response and developmental implications of RNAi-mediated ODC knockdown in tobacco. Funct Integr Genomics. pp 1-14.
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Microarray services
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354
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2016
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Tellapragada C, Kamthan A, Shaw T, KEV, KumarS, Bhat V, et al. (2016) Unravelling the Molecular Epidemiology and Genetic Diversity among Burkholderia pseudomallei Isolates from South India Using Multi Locus Sequence Typing. PLoS ONE 11(12):e0168331.doi:10.1371/journal.pone.0168331
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NGS
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353
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2016
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Pandey SS, Patnana PK, Lomada SK, Tomar A, Chatterjee S (2016) Co-regulation of Iron Metabolism and Virulence Associated Functions by Iron and XibR, a Novel Iron Binding Transcription Factor, in the Plant Pathogen Xanthomonas. PLoS Pathog 12(11): e1006019. doi:10.1371 /journal. ppat.1006019.
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Microarray services
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352
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2016
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Jees Sebastian, Sharmada Swaminath, Rashmi Ravindran Nair, Kishor Jakkala, Atul Pradhan and Parthasarathi Ajitkumar. (2016) De Novo Emergence of Genetically Resistant Mutants of Mycobacterium tuberculosis from the Persistence Phase Cells formed against Antituberculosis Drugs In Vitro. Antimicrob. Agents Chemother. AAC.01343-16.
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NGS
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351
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2016
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Megha H. Sampangi-Ramaiah, Kundapura V. Ravishankar, Ajitha Rekha, Kodathalu Seetharamaiah Shivashankara, laxman R. Hunashikatti. A Contig-Based Computational Prediction of Conserved miRNAs and Their Probable Role in Regulation of Cuticular Wax Biosynthesis in Banana. Plant Mol Biol Rep (2016).
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miRNA
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350
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2016
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Deepak Kumar, Saptarshi Hazra, Riddhi Datta & Sharmila Chattopadhyay. Transcriptome analysis of Arabidopsis mutants suggests a crosstalk between ABA, ethylene and GSH against combined cold and osmotic stress. Scientific Reports 6, Article number: 36867; (2016).
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Microarray services
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349
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2016
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Das P, Bansal A, Rao SN, Deodhar K, Mahantshetty U, Shrivastava SK, et al. (2016) Somatic Variations in Cervical Cancers in Indian Patients.PLoS ONE 11(11):e0165878.
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NGS
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348
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2016
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Muthuswamy M, Uma S, Backiyarani S, Saraswathi MS and Chandrasekar A. Transcriptomic Changes of Drought-Tolerant and Sensitive Banana Cultivars Exposed to Drought Stress. Front. Plant Sci (2016). 7:1609
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NGS
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347
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2016
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Rohini Bhat Valekunja, Vikramshankar Kamakoti, Anitha Peter, Shamprasad Phadnis, Shalini Prasad and Vinay J Nagaraj. The Detection of Papaya Ringspot Virus Coat Protein Using an Electrochemical Immunosensor. Analytical Methods (2016).
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NGS
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346
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2016
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Jayaraman Suriya,Mootapally Chandra Shekar, Neelam Mustakali Nathani,Thangaiyan Suganya,Subramanian Bharathiraja,Muthukalingan Krishnan. Assessment of bacterial community composition in response to uranium levels in sediment samples of sacred Cauvery River. Applied Microbiology and Biotechnology (2016).
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NGS
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345
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2016
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Anirban Kundu, Sujay Paul, Amita Pal and Genotypic Technology. Mungbean Yellow Mosaic India Virus (MYMIV)-infection, Small RNA Library Construction and Deep Sequencing for MicroRNA Identification in Vigna mungo. bio-protocol (2016).
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NGS
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344
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2016
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Vandana Sharma, Rajaram Purushotham and Rupinder Kaur. The phosphoinositide 3-kinase regulates retrograde trafficking of the iron permease CgFtr1 and iron homeostasis in Candida glabrata. The Journal of Biological Chemistry (2016)
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NGS
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343
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2016
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Ruchishree Konhar, Devendra Kumar Biswal, Manish Debnath, Sriram Parameswaran, Durai Sundar, Pramod Tandon. Complete Chloroplast Genome Sequence of Dendrobium nobile from Northeastern India. American Society for Microbiology - Genome Announcements; vol 4 (5) (2016).
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NGS
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342
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2016
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Akansha Pandey, Vishakha Swarnkar, Tushar Pandey, Piush Srivastava, Sanjeev Kanojiya, Dipak Kumar Mishra & Vineeta Tripathi. Transcriptome and Metabolite analysis reveal candidate genes of the cardiac glycoside biosynthetic pathway from Calotropis procera. NATURE Scientific Reports 6, Article number: 34464 (2016)
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NGS, Seq QC
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341
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2016
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Pon Arunachalam Boopathi, Amit Kumar Subudhi, Sheetal Middha, Jyoti Acharya, Raja Chinnadurai Mugasimangalam, Sanjay Kumar Kochar, Dhanpat Kumar Kochar, Ashis Das. Design, Construction and Validation of a Plasmodium vivax microarray for the transcriptome profiling of clinical isolates. Acta Tropica (2016)
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Microarray services
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340
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2016
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Srilatha Jasty, Subramanian Krishnakumar. Profiling of DNA and histone methylation reveals epigenetic-based regulation of gene expression during retinal differentiation of Stem/progenitor cells isolated from the ciliary pigment epithelium of Human cadaveric eyes. Brain Research (2016)
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Microarray services
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339
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2016
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Anirban Roychowdhury, Sudip Samadder, Pijush Das, Sapan Mandloi, Sankar Addya, Chandraditya Chakraborty, Partha Sarathi Basu, Ranajit Mondal, Anup Roy, Saikat Chakrabarti, Susanta Roychoudhury, Chinmay Kumar Panda. Integrative genomic and network analysis identified novel genes associated with the development of advanced cervical squamous cell carcinoma. Biochimica et Biophysica Acta (BBA) - General Subjects (2016).
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Microarray
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338
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2016
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Ansari MA, Fatima Z, Hameed S. Anticandidal Effect and Mechanisms of Monoterpenoid, Perillyl Alcohol against Candida albicans. PLoS ONE (2016);Vol 11(9): e0162465. doi:10.1371/journal.pone.0162465
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Microarray services
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337
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2016
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Devika Ranade, Shivsmriti Koul, Joyce Thompson, Kumar Brajesh Prasad, Kundan Sengupta. Chromosomal aneuploidies induced upon Lamin B2 depletion are mislocalized in the interphase nucleus. Chromosoma (2016).DOI 10.1007/s00412-016-0580-y
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Microarray services
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336
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2016
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Kaliyappan R, Viswanathan S, Suthanthiram B, Subbaraya U, Marimuthu Somasundram S, et al. (2016) Evolutionary Expansion of WRKY Gene Family in Banana and Its Expression Profile during the Infection of Root Lesion Nematode, Pratylenchus coffeae. PLoS ONE 11(9): e0162013. doi: 10.1371/journal.pone.0162013
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NGS
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335
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2016
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Atish Ray, Asani Bhaduri, Nidhi Srivastava, Shibnath Mazumder. Identification of novel signature genes attesting arsenic-induced immune alterations in adult zebrafish (Danio rerio). Journal of Hazardous Materials(2017);Volume 321, Pages 121–131
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Microarray services
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334
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2016
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Ganesan S, Alex AA, Chendamarai E, Balasundaram N, Palani HK, David S, Kulkarni U, Aiyaz M, Mugasimangalam R, Korula A, Abraham A, Srivastava A, Padua RA, Chomienne C, George B, Balasubramanian P, Mathews V. Rationale and efficacy of proteasome inhibitor combined with arsenic trioxide in the treatment of acute promyelocytic leukemia. Leukemia. 2016 Aug, Vol 18. doi: 10.1038/leu.2016.227.
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Microarray services
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333
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2016
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Snehal D. Karpe, Rikesh Jain, Axel Brockmann and R. Sowdhamini.Identification of complete repertoire of Apis florea odorant receptors reveals complex orthologous relationships with Apis mellifera. Genome Biology and Evolution,2016;doi:10.1093/gbe/evw202
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NGS
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332
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2016
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Haoxin Li, Andrew Cowie, John A. Johnson, Duncan Webster, Christopher J. Martyniuk and Christopher A. Gray. Determining the mode of action of anti-mycobacterial C17 diyne natural products using expression profiling: evidence for fatty acid biosynthesis inhibition. BMC Genomics (2016) 17:621. DOI 10.1186/s12864-016-2949-y
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Microarray services
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331
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2016
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Sujay Paul, Yolanda Cortez,Nadia Vera,Gretty K. Villena and Marcel Gutiérrez-Correa. BBJ, 15(1): 1-11, 2016; Article no.BBJ.27519
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NGS
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330
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2016
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Pallavi Kakade, Parag Sadhale, Kaustuv Sanyal & Valakunja Nagaraja. ZCF32, a fungus specific Zn(II)2 Cys6 transcription factor, is a repressor of the biofilm development in the human pathogen Candida albicans. Scientific Reports 6, Article number: 31124 (2016) doi:10.1038/srep31124.
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Microarray services
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329
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2016
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Cornelia Braicu, Sonia Selicean, Roxana Cojocneanu-Petric, Raduly Lajos, Ovidiu Balacescu, Ionelia Taranu, Daniela Eliza Marin, Monica Motiu, Ancuta Jurj, Patriciu Achimas-Cadariu and Ioana Berindan-Neagoe.Evaluation of cellular and molecular impact of zearalenone and Escherichia coli co-exposure on IPEC-1 cells using microarray technology.BMC Genomics (2016);17:576. DOI: 10.1186/s12864-016-2830-z
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Microarray services
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328
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2016
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Josephy D. DiBattista, Xin Wang, Pablo Saenz-Agudelo, Marek J. Piatek, Manuel Aranda, Michael L Berumen.Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics. Molecular Ecology Resources (2016); DOI: 10.1111/1755-0998.12588
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NGS
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327
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2016
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Ashok Ganapathy, Sridhar Jayavel and Sivakumar Natesan. Draft Genome Sequence of Carotenoid Producing Yellow Pigmented Planococcus maritimus MKU009.Journal of Genomics 2016, Vol. 4: 23-25. doi: 10.7150/jgen.15533
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NGS
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326
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2016
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Vairavan Lakshmanan, Dhiru Bansal, Jahnavi Kulkarni, Deepak Poduval, Srikar Krishna, Vidyanand Sasidharan, Praveen Anand, Aswin Seshasayee and Dasaradhi Palakodeti. Genome-wide analysis of polyadenylation events in Schmidtea mediterranea.G3: Genes|Genomes|Genetics (2016) doi:10.1534/g3.116.031120
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NGS
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325
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2016
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Alok Kumar Singh, Rajeev Kumar Pandey, Chandrima Shaha & Rentala Madhubala. MicroRNA expression profiling of Leishmania donovani-infected host cells uncovers the regulatory role of MIR30A-3p in host autophagy. Autophagy (2016)
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NGS
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324
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2016
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Amit Kumar Subudhi, P.A. Boopathi, Sheetal Middha, Jyoti Acharya, Sudha Narayana Rao, Raja C. Mugasimangalam, Paramendra Sirohi, Sanjay K. Kochar, Dhanpat K. Kochar, Ashis Das. A cross strain Plasmodium falciparum microarray optimized for the transcriptome analysis of Plasmodium falciparum patient derived isolates.Genomics Data (2016); Vol 9, Pg 118–125
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Transcriptome profiling, NGS
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323
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2016
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Chakrapani, V., Patra, S.K., Mohapatra, S.D. et al. Comparative transcriptomic profiling of larvae and post-larvae of Macrobrachium rosenbergii in response to metamorphosis and salinity exposure. Genes Genom (2016). doi:10.1007/s13258-016-0452-0
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NGS
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322
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2016
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Moiz A. Ansari1, Zeeshan Fatima1, Saif Hameed. Mechanistic insights into the mode of action of anticandidal sesamol. Microbial Pathogenesis (2016); vol 98, Pg 140-148
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NGS
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321
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2016
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Sujay Paul, Yolanda Cortez, Nadia Vera, Gretty K. Villena, Marcel Gutiérrez-Correa. Metagenomic analysis of microbial community of an Amazonian geothermal spring in Peru. Genomics Data (2016); Vol 9, pg 63-66
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NGS
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320
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2016
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Jatoth Balsingh, Surabhi Radhakrishna, Kandasamy Ulaganathan.Draft Genome Sequence of Bacillus pumilus ku-bf1 Isolated from the Gut Contents of Wood Boring Mesomorphus sp. Front. Microbiol,2016 June, doi: 10.3389/fmicb.2016.01037
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NGS
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319
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2016
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Shilpa Sharma, Gurudutta Gangenahalli. Gene Expression Profiling of Human c-Kit Mutant D816V. Journal of Cancer Therapy, 2016 June,Vol 7,Pg 439-454
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Microarray
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318
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2016
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Mahendra Gaur, Aradhana Das, Rajesh Kumar Sahoo, Sujata Mohanty, Raj Kumar Joshi, Enketeswara Subudhi. Comparative transcriptome analysis of ginger variety Suprabha from two different agro-climatic zones of Odisha.Genomics Data, 2016 September, Vol 9, Pages 42–43
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NGS
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317
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2016
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Mahendra Gaur,Aradhana Das,Rajesh Kumar Sahoo,Basudeba Kar,Sanghamitra Nayak,Enketeswara Subudhi.De Novo transcriptome assembly of Zingiber officinale cv. Suruchi of Odisha.Genomics Data, 2016 September,Vol 9,Pages 87–88
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NGS
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316
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2016
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Naveen Prasad, Shreeharsha Tarikere, Dhanashree Khanale, Farhat Habib, LS Shashidhara.A comparative genomic analysis of targets of Hox protein Ultrabithorax amongst distant insect species. Scientific Reports, 2016, vol 6, Article number: 27885.doi:10.1038/srep27885
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NGS
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315
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2016
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Nilakshi Samaranayake, Sumadhya D. FernandoEmail author, Nilaksha F. Neththikumara, Chaturaka Rodrigo, Nadira D. Karunaweera and Vajira H. W. Dissanayake.Association of HLA class I and II genes with cutaneous leishmaniasis: a case control study from Sri Lanka and a systematic review.BMC Infectious Diseases, (2016) 16:292.DOI 10.1186/s12879-016-1626-8
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NGS
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314
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2016
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Aarti Yadav, Udita Chandra & Swati Saha. Histone acetyltransferase HAT4 modulates navigation across G2/M and re-entry into G1 in Leishmania donovani. Nature Publishing Group. Scientific Reports, 2016 June, Vol 6
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NGS
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313
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2016
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S. Dharshinia, M. Chakravarthia, J.Ashwin Narayana, V.M. Manoj, M. Naveenarani, Ravinder Kumar, Minturam Meena, Bakshi Ram, C. Appunu. De novo sequencing and transcriptome analysis of a low temperature tolerant Saccharum spontaneum clone IND 00-1037. Journal of Biotechnology, 2016 August, Vol 231,Pg 280–294.
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NGS
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312
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2016
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Anirvan Chatterjee, Farhan Ali, Disha Bange, Kiran Kondabagil. solation and complete genome sequencing of Mimivirus bombay, a Giant Virus in sewage of Mumbai, India. Genomics Data, 2016 September, Vol 9,Pg 1–3
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NGS
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311
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2016
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Aleksei Krasnov, Hooman Moghadam, Thomas Larsson, Sergey Afanasyev, Turid Mørkøre. Gene expression profiling in melanised sites of Atlantic salmon fillets. Fish & Shellfish Immunology, 2016 August, Vol 55, Pg 56-63
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NGS
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310
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2016
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Satendra Kumar Mangrauthia, Surekha Agarwal, B. Sailaja, N. Sarla, S. R. Voleti. Transcriptome Analysis of Oryza sativa (Rice) Seed Germination at High Temperature Shows Dynamics of Genome Expression Associated with Hormones Signalling and Abiotic Stress Pathways. Tropical Plant Biol. (2016). doi:10.1007/s12042-016-9170-7
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NGS
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309
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2016
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Kushal N. Gohil, Priya S. Neurgaonkar , Aditi Paranjpe , Syed G. Dastager, Mahesh S. Dharne. Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions. Elsevier, 2016 August, Vol 8, Pg. 72-76
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NGS
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308
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2016
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Kamaldeen Nasrin Nisha, Jayavel Sridhar, Perumal Varalakshmi and Balasubramaniem Ashokkumar Draft Genome Sequence of Paracoccus sp. MKU1, a New Bacterial Strain Isolated from an Industrial Effluent with Potential for Bioremediation. Journal of Genomics 2016, Vol. 4:13-15. doi: 10.7150/jgen.14847
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NGS
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307
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2016
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Rathan S. Jadav, Dharmika Kumara, Natasha Buwa, Shubhra Gangulia, Sitalakshmi R. Thampattya, Nagaraj Balasubramanian, Rashna Bhandaria. Deletion of inositol hexakisphosphate kinase 1 (IP6K1) reduces cell migration and invasion, conferring protection from aerodigestive tract carcinoma in mice. Elsevier, 2016 August, Vol 28(8), Pg 1124–1136
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Microarray services
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306
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2016
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Garima Sharma, Divya Tej Sowpati, Prakruti Singh, Mehak Zahoor Khan, Rakesh Ganji, Sandeep Upadhyay, Sharmistha Banerjee, Vinay Kumar Nandicoori & Sanjeev Khosla. Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection. Scientific Reports 6, Article number: 25006 (2016) doi:10.1038/srep25006
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NGS
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305
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2016
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Oliver J Hickman, Richard A Smith, Prokar Dasgupta, Sudha Narayana Rao, Soumya Nayak, Shubha Sreenivasan, Annapurna Vyakarnam and Christine Galustian. Expression of two WFDC1/ps20 isoforms in prostate stromal cells induces paracrine apoptosis through regulation of PTGS2/COX-2. British Journal of Cancer 114, 1235-1242 (24 May 2016) | doi:10.1038/bjc.2016.91
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NGS
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304
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2016
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Mohan A, Singh RS, Kumari M, Garg D, Upadhyay A, Ecelbarger CM, et al. (2016) Urinary Exosomal microRNA-451-5p Is a Potential Early Biomarker of Diabetic Nephropathy in Rats. PLoS ONE 11(4): e0154055. doi:10.1371/journal. pone.0154055
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NGS
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303
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2016
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Kushal N. Gohil, Priya S. Neurgaonkar, Aditi Paranjpe, Syed G. Dastager , Mahesh S. Dharne. Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions, Elsevier. 2016 June; Vol 8: 72–76.
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NGS
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302
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2016
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Manjima chatterjee, Upasana Mukherjee, Narmada Ashok, Raja Das, Suvrajit Das and Radha Saraswathy. MCP polymorphism, environmental risk factors and asthma - a hospital based study in vellore, Int J Pharm Bio Sci 2016 April; 7(2): (B) 598 – 605.
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NGS
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301
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2016
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Hittalmani S, Mahesh HB, Mahadevaiah C, Prasannakumar MK. De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways. BMC Genomics. 2016;17(1):271.
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NGS
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300
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2016
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Haddad NJ, Batainh A, Saini D, et al. Evaluation of Apis mellifera syriaca Levant region honeybee conservation using comparative genome hybridization. Genetica. 2016;
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Microarray
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299
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2016
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Nair RG, Kaur G, Khatri I, Singh NK, Maurya SK, et al. (2016) Genome Mining and Comparative Genomic Analysis of Five Coagulase-Negative Staphylococci (CNS) Isolated from Human Colon and Gall Bladder. J Data Mining Genomics Proteomics 7: 192. doi:10.4172/2153-0602.1000192
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NGS
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298
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2016
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Saxena S, Saxena VK, Tomar S, Sapcota D, Gonmei G. Characterization of caecum and crop microbiota of Indian indigenous chicken targeting multiple hypervariable regions within 16s rRNA gene. Br Poult Sci. 2016;
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NGS
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297
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2016
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Balachander GM, Balaji SA, Rangarajan A, Chatterjee K. Enhanced Metastatic Potential in a 3D Tissue Scaffold toward a Comprehensive in Vitro Model for Breast Cancer Metastasis. ACS Appl Mater Interfaces. 2015;7(50):27810-22.
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Microarray
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296
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2016
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Kushwaha P, Khedgikar V, Sharma D, et al. MicroRNA 874-3p Exerts Skeletal Anabolic Effects Epigenetically during Weaning by Suppressing Hdac1 Expression. J Biol Chem. 2016;291(8):3959-66.
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Microarray
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295
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2016
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Manisha P, Mamta T, Umesh R, Soma M G. Tracing the evolutionary lineage of pattern recognition receptor homologues in vertebrates: An insight into reptilian immunity via de novo sequencing of the wall lizard splenic transcriptome. j.vetimm.2016;
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NGS
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294
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2016
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Forero DA, Wonkam A, Wang W, Mugasimangalam R, et al. Current needs for human and medical genomics research infrastructure in low and middle income countries. J Med Genet. 2016;
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NGS
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293
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2016
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Gupta KR, Baloni P, Indi SS, Chatterji D. Regulation of growth, cell shape, cell division and gene expression by second messengers (p)ppGpp and c-di-GMP in Mycobacterium smegmatis. J Bacteriol. 2016;
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Microarray
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292
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2016
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Sayak Ganguli, Avishek Dey, Rahul Banik, Anirban Kundu, Amita Pal, Analyses of MYMIV-induced transcriptome in Vigna mungo as revealed by next generation sequencing, Genomics Data (2016)
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NGS
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291
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2016
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Qayyum MZ, Dey D, Sen R. J Biol Chem. Transcription elongation factor NusA is a general antagonist of Rho-dependent termination in Escherichia coli. jbc.M115.701268. 2016 Feb 12.
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Microarray
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290
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2016
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Blessia TF, Singh S, Vennila JJ. Unwinding the Novel Genes Involved in the Differentiation of Embryonic Stem Cells into Insulin-Producing Cells: A Network-Based Approach. Interdiscip Sci. 2016;
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Microarray
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289
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2016
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Chatterjee G, Sankaranarayanan SR, Guin K, et al. Repeat-Associated Fission Yeast-Like Regional Centromeres in the Ascomycetous Budding Yeast Candida tropicalis. PLoS Genet. 2016;12(2):e1005839.
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Microarray
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288
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2016
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Govindaraj L, Gupta T, Esvaran VG, Awasthi AK, Ponnuvel KM. Genome-wide identification, characterization of sugar transporter genes in the silkworm Bombyx mori and role in Bombyx mori nucleopolyhedrovirus (BmNPV) infection. Gene. 2016;579(2):162-71.
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Microarray
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287
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2016
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Archana Singh, Enketeswara Subudhi, Rajesh Kumar Sahoo, Mahendra Gaur, Investigation of the microbial community in the Odisha hot spring cluster based on the cultivation independent approach, Genomics Data (2016)
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NGS
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286
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2016
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Ducat A, Doridot L, Calicchio R, et al. Endothelial cell dysfunction and cardiac hypertrophy in the STOX1 model of preeclampsia. Sci Rep. 2016;6:19196.
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NGS
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285
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2015
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Lekha G, Gupta T, Awasthi AK, Murthy GN, Trivedy K, Ponnuvel KM. Genome wide microarray based expression profiles associated with BmNPV resistance and susceptibility in Indian silkworm races of Bombyx mori. Genomics. 2015;106(6):393-403.
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Microarray
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284
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2015
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Andreuzza S, Nishal B, Singh A, Siddiqi I. The Chromatin Protein DUET/MMD1 Controls Expression of the Meiotic Gene TDM1 during Male Meiosis in Arabidopsis. PLoS Genet. 2015;11(9):e1005396.
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Microarray
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283
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2015
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Sundaresan S, Philosoph-hadas S, Riov J, Mugasimangalam R, Kuravadi NA, Kochanek B, Salim S, Tucker ML and Meir S(2015) De novo transcriptome sequencing and development of abscission zone-specific microarray as a new molecular tool for analysis of tomato organ abscission. Front. Plant Sci. 6:1258. doi:10.3389/fpls.2015.01258
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Microarray
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282
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2015
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Kim J, Sundaresan S, Philosoph-hadas S, Yang R, Meir S, Tucker ML. Examination of the Abscission-Associated Transcriptomes for Soybean, Tomato, and Arabidopsis Highlights the Conserved Biosynthesis of an Extensible Extracellular Matrix and Boundary Layer. Front Plant Sci. 2015;6:1109.
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Microarray
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281
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2015
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Archana S, Enketeswara S, Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing, (2015), doi:10.1016/j.gdata.2015.12.004
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NGS
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280
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2015
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Mohan A, Bhosle A, Chandra N. 2015. Complete genome sequences of an Escherichia coli laboratory strain and trimethoprim-resistant (TMP32XR) mutant strains. Genome Announc 3(6):e01434-15. doi:10.1128/genomeA.01434-15.
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NGS
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279
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2015
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Sathishkumar Y, Krishnaraj C, Rajagopal K, Sen D, Lee YS. High throughput de novo RNA sequencing elucidates novel responses in Penicillium chrysogenum under microgravity. Bioprocess Biosyst Eng. 2015;
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NGS
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278
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2015
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Mondal TK, Ganie SA, Debnath AB (2015) Identification of Novel and Conserved miRNAs from
Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice. PLoS ONE 10(10): e0140675. doi:10.1371/journal.pone.0140675
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NGS
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277
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2015
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Kumar A, Henrissat B, Arvas M, Syed MF, Thieme N, Benz JP, et al. (2015) De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulisStrain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster. PLoS ONE 10(10): e0140398. doi:10.1371/journal.pone.0140398
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NGS
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276
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2015
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Ravishankar, K.V., Megha, H.S., Rekha, A., Khadke, G.N., Veerraju, C.H., Insights into Musa balbisiana and Musa acuminata species divergence and development of genic microsatellites by transcriptomics approach, (2015), doi: 10.1016/j.plgene.2015.09.007
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NGS
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275
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2015
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Chakka D, Gudla R, Madikonda AK, et al. The organophosphate degradation (opd) island borne esterase induced metabolic diversion in E. coli and its influence on p-nitrophenol degradation. J Biol Chem. 2015;
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Microarray
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274
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2015
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Desler C, Frederiksen JH, Angleys M, et al. Increased deoxythymidine triphosphate levels is a feature of relative cognitive decline. Mitochondrion. 2015;
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NGS
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273
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2015
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Chhakchhuak L, De mandal S, Gurusubramanian G, et al. Complete mitochondrial genome of the Himalayan honey bee, Apis laboriosa. Mitochondrial DNA. 2015;:1-2.
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NGS
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272
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2015
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Sahoo RK, Subudhi E , Kumar M. Investigation of bacterial diversity of hot springs of Odisha, India. Genomics Data 2015.
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NGS
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271
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2015
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Pathak BR, Breed AA, Apte S, Acharya K, Mahale SD. Cysteine-rich secretory protein 3 plays a role in prostate cancer cell invasion and affects expression of PSA and ANXA1. Mol Cell Biochem. 2015;
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Microarray
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270
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2015
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Chatterjee S, Alampalli SV, Nageshan RK, Chettiar ST, Joshi S, Tatu US. Draft genome of a commonly misdiagnosed multidrug resistant pathogen Candida auris. BMC Genomics. 2015;16(1):686.
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NGS, Seq QC
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269
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2015
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Halder P, Kumar R, Jana K, et al. Gene expression profiling of Mycobacterium tuberculosis Lipoarabinomannan-treated macrophages: A role of the Bcl-2 family member A1 in inhibition of apoptosis in mycobacteria-infected macrophages. IUBMB Life. 2015;
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Microarray
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268
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2015
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Garg A, Agrawal L, Misra RC, Sharma S, Ghosh S. Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes. BMC Genomics. 2015;16:659.
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NGS, Seq QC
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267
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2015
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M. Muthusamy, S. Uma, S. Backiyarani, M. S. Saraswathi.Genome-wide screening for novel, drought stress-responsive long non-coding RNAs in drought-stressed leaf transcriptome of drought-tolerant and -susceptible banana (Musa spp) cultivars using Illumina high-throughput sequencing. Plant Biotechnology Reports 2015.
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NGS
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266
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2015
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Kamala, S.; Makeshkumar, T. Transcriptome profiling of in vitro lines propagated from corm bud tip of elephant foot yam (Amorphophallus paeoniifolius) approves complete potyviruses elimination. European Journal of Plant Pathology 2015.
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NGS
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265
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2015
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Meir, S., Sundaresan, S., Riov, J., Agarwal, I., & Philosoph-Hadas, S. (2015). Role of auxin depletion in abscission control. Stewart Postharvest Review,11(2), 1-15.
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Microarray
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264
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2015
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Srivastava PL, Daramwar PP, Krithika R, Pandreka A, Shankar SS, Thulasiram HV. Functional Characterization of Novel Sesquiterpene Synthases from Indian Sandalwood, Santalum album. Sci Rep. 2015;5:10095.
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NGS, Molecular biology
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263
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2015
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Subudhi AK, Boopathi PA, Pandey I, et al. Disease specific modules and hub genes for intervention strategies: A co-expression network based approach for Plasmodium falciparum clinical isolates. Infect Genet Evol. 2015;35:96-108.
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Array design
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262
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2015
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Mathan kumar R, Kaur G, Kumar N, et al. Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a novel halotolerant bacterium isolated from marine sediment. Int J Syst Evol Microbiol. 2015;
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NGS
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261
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2015
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Chhakchhuak L, De mandal S, Gurusubramanian G, Nachimuthu SK. The near complete mitochondrial genome of the Giant honey bee, Apis dorsata (Hymenoptera: Apidae: Apinae) and its phylogenetic status. Mitochondrial DNA. 2015;:1-2.
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NGS
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260
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2015
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Sahu DK, Panda SP, Meher PK, et al. Construction, De-Novo Assembly and Analysis of Transcriptome for Identification of Reproduction-Related Genes and Pathways from Rohu, Labeo rohita (Hamilton). PLoS ONE. 2015;10(7):e0132450.
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SeqQC - V2.1
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259
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2015
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Dholaniya PS, Ghosh S, Surampudi BR, Kondapi AK. A knowledge driven supervised learning approach to identify gene network of differentially up-regulated genes during neuronal senescence in Rattus norvegicus. BioSystems. 2015;
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Biointerpreter
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258
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2015
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Cheedipudi S, Puri D, Saleh A, et al. A fine balance: epigenetic control of cellular quiescence by the tumor suppressor PRDM2/RIZ at a bivalent domain in the cyclin a gene. Nucleic Acids Res. 2015;
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Microarray
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257
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2015
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Abraham A, Varatharajan S, Karathedath S, et al. RNA expression of genes involved in cytarabine metabolism and transport predicts cytarabine response in acute myeloid leukemia. Pharmacogenomics. 2015;:1-14.
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Microarray
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256
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2015
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Vanlalruati C, Mandal S, Gurusubramanian G, Senthil kumar N. Complete mitochondrial genome of Chocolate Pansy, Junonia iphita (Lepidoptera: Nymphalidae: Nymphalinae). Mitochondrial DNA. 2015;:1-2.
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NGS
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255
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2015
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Manjegowda MC,Deb G,Kumar N,Limaye AM. Expression profiling of genes modulated by estrogen, EGCG or both in MCF-7 breast cancer cells. Genomics Data. 2015
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Microarray
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254
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2015
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Nithin C, Patwa N, Thomas A, Bahadur RP, Basak J. Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures. BMC Plant Biol. 2015;15(1):140.
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NGS
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253
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2015
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Gupta KP, Dholaniya PS, Chekuri A, Kondapi AK. Analysis of gene expression during aging of CGNs in culture: implication of SLIT2 and NPY in senescence. Age (Dordr). 2015;37(3):9789.
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Biointerpreter
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252
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2015
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Shukla A, Singh VK, Bharadwaj DR, et al. De Novo Assembly of Bitter Gourd Transcriptomes:Gene Expression and Sequence Variations in Gynoecious and Monoecious Lines. PLoS ONE. 2015;10(6):e0128331.
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NGS
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251
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2015
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Subudhi AK, Boopathi PA, Pandey I, et al. Plasmodium falciparum Complicated Malaria: Modulation and Connectivity between Exportome and Variant Surface Antigen Gene Families. Mol Biochem Parasitol. 2015.
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Microarray
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250
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2015
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Sahoo L, Kumar S, Das SP, et al. Complete mitochondrial genome sequence of Heteropneustes fossilis obtained by paired end next generation sequencing. Mitochondrial DNA. 2015;:1-2
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NGS
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249
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2015
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Rastogi S, Kalra A, Gupta V, et al. Unravelling the genome of Holy basil: an "incomparable" "elixir of life" of traditional Indian medicine. BMC Genomics. 2015;16:413.
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NGS
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248
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2015
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Padiadpua J, Baloni P, Chandra N. Gene expression profiles of wild-type and isoniazid-resistant strains of Mycobacterium smegmatis. Science Direct. 2015
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Microarray
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247
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2015
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Fonseca DJ, Patiño LC, Suárez YC, et al. Next generation sequencing in women affected by nonsyndromic premature ovarian failure displays new potential causative genes and mutations. Fertil Steril. 2015
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NGS
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246
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2015
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Ghag SB, Shekhawat UK, Ganapathi TR. Small RNA Profiling of Two Important Cultivars of Banana and Overexpression of miRNA156 in Transgenic Banana Plants. PLoS ONE. 2015;10(5):e0127179.
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NGS
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245
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2015
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B. Kesavan, K.V. Srividhya, S. Krishnaswamy, Mugasimangalam Raja, N. Vidya, A.V.S.K. Krishna Mohan. Understanding the virulence of the entero-aggregative E. coli O104:H4.Int. J. of Bioinformatics Research and Applications. 2015
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NGS
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244
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2015
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Arya R, R R, Rs S and Princy S. SarA based Novel Therapeutic Candidate against Staphylococcus aureus associated with Vascular Graft Infections. Front. Microbiol.2015
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qPCR
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243
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2015
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Kanaujia PK, Bajaj P, Singhal N, et al. Proteomic analysis of Yersinia enterocolitica biovar 1A under iron-rich and iron-poor conditions indicate existence of efficiently regulated mechanisms of iron homeostasis.Journal of Proteomics. 2015
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Mol Bio
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242
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2015
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Chakraborty N, Sharma P, Kanyuka K, et al. Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation. PLoS ONE. 2015;10(2):e0117819.
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NGS Analysis
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241
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2015
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Bose D, Shetty M, Kutty A.V.M, et al. Molecular Delineation of Partial Trisomy 14q and Partial Trisomy 12p in a Patient with Dysmorphic Features, Heart Defect and Developmental Delay. Cytogenet Genome Res. 2015
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Microarray
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240
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2015
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Vaid N, Pandey P, Srivastava VK, Tuteja N. Pea lectin receptor-like kinase functions in salinity adaptation without yield penalty, by alleviating osmotic and ionic stresses and upregulating stress-responsive genes. Plant Mol Biol. 2015.
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Microarray Analysis
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239
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2015
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Kumar D, Datta R, Hazra S, Sultana A, Mukhopadhyay R, Chattopadhyay S. Transcriptomic Profiling of Arabidopsis thaliana Mutant pad2.1 in Response to Combined Cold and Osmotic Stress. PLoS ONE. 2015;10(3):e0122690.
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Array Design
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238
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2015
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Chendamarai E, Ganesan S, Alex AA, et al. Comparison of newly diagnosed and relapsed patients with acute promyelocytic leukemia treated with arsenic trioxide: insight into mechanisms of resistance. PLoS ONE. 2015;10(3):e0121912.
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NGS & Microarray
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237
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2015
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Pallavi B, Shankar KM, Abhiman PB, Iqlas A.Identification of putative genes involved in parasitism in the anchor worm, Lernaea cyprinacea by de novo Transcriptome analysis.Experimental Parasitology. 2015
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NGS
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236
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2015
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Rajagopal I, Sankareswaran UM. An Adaptive Particle Swarm Optimization Algorithm for Solving DNA Fragment Assembly Problem. Current Bioinformatics. 2015
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NGS
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235
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2015
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Srivastava VK, Suneetha KJ, Kaur R. The mitogen-activated protein kinase CgHog1 is required for iron homeostasis, adherence and virulence in Candida glabrata. FEBS J. 2015.
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Microarray
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234
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2015
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Banerjee A, Ghoshal PK, Sengupta K.Novel Linkage of LMNA Single nucleotide polymorphism with Dilated Cardiomyopathy in an Indian case study. IJC Heart & Vasculature. 2015
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NGS Analysis
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233
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2015
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Rai R, Javvadi S, Chatterjee S. Cell-cell signaling promotes ferric iron uptake in Xanthomonas oryzae pv. oryzicola that contribute to its virulence and growth inside rice. Mol Microbiol. 2015.
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Micraorray
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232
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2015
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Sen D, Chandrababunaidu MM, Singh D, et al. Draft Genome Sequence of the Terrestrial Cyanobacterium Scytonema millei VB511283, Isolated from Eastern India. Genome Announc. 2015;3(2)
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NGS
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231
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2015
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Mittra I, Khare NK, Raghuram GV, Chaubal R, Khambatti F, Gupta D, Gaikwad A, Prasannan P, Singh A, Iyer A, Singh A, Upadhyay P, Nair NK, Mishra PK and Dutt A. Circulating nucleic acids damage DNA of healthy cells by integrating into their genomes.J. Biosci. 40 91–111.2015
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NGS
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230
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2015
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Swain S, Singh N and Nandi AK. Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.J. Biosci. 40 137–146.2015
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Microarray
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229
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2015
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Haddada NJ, AlShagoora B, Batainh AM, et al. Draft genome sequence of the Algerian bee Apis mellifera intermissa. Genomics Data. 2015
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NGS
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228
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2015
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Tirumalai PS. Metabolic Gene Expression Shift by Listeria monocytogenes in Co-Culture Biofilms.Canadian J of Microbiology. 2015
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Microarray
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227
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2015
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Backiyarani S, Uma S, Nithya S, et al. Genome-Wide Analysis and Differential Expression of Chitinases in Banana Against Root Lesion Nematode (Pratylenchus coffeae) and Eumusa Leaf Spot (Mycosphaerella eumusae) Pathogens. J Applied Biochemistry and Biotechnology. 2015
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NGS
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226
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2015
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Shekhar MS, Gomathi A, Gopikrishna G, Ponniah AG. Gene expression profiling in gill tissues of White spot syndrome virus infected black tiger shrimp Penaeus monodon by DNA microarray.VirusDisease. 2015
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Custom Array Design
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225
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2015
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Goodsmith N, Guo XV, Vandal OH, et al. Disruption of an M. tuberculosis Membrane Protein Causes a Magnesium-dependent Cell Division Defect and Failure to Persist in Mice. PLoS Pathog. 2015;11(2):e1004645.
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Custom Array Design
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224
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2015
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Mohan A, Padiadpu J, Baloni P, Chandra N. Complete Genome Sequences of a Mycobacterium smegmatis Laboratory Strain (MC2 155) and Isoniazid-Resistant (4XR1/R2) Mutant Strains. Genome Announc. 2015;3(1)
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NGS
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223
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2015
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Malhotra V, Agrawal R,Duncan TR,Saini DK, Clark-Curtiss JE.Mycobacterium tuberculosis Response Regulators, DevR and NarL Interact In Vivo and Co-Regulate Gene Expression during Aerobic Nitrate Metabolism.J Biol Chem. 2015
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Array design and Microarray
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222
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2015
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Haddad NJ. Mitochondrial genome of the Levant Region honeybee, Apis mellifera syriaca (Hymenoptera: Apidae). Mitochondrial DNA. 2015;:1-2.
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NGS
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221
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2015
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Gopurappilly R, Bhonde R. Transcriptional profiling and functional network analyses of islet-like clusters (ILCs) generated from pancreatic stem cells in vitro. Genomics. 2015
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Biointerpreter
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220
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2015
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Haddad NJ, Batainh AM, Migdadi OS, et al. Next generation sequencing of Apis mellifera syriaca identifies genes for Varroa resistance and beneficial bee keeping traits. Insect Sci. 2015
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NGS
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219
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2015
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Nature-inspired novel Cuckoo Search Algorithm for genome sequence assembly. Sadhana J.2015
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NGS
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218
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2015
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Dasgupta MG, Dharanishanthi V, Agarwal I, Krutovsky KV. Development of genetic markers in eucalyptus species by target enrichment and exome sequencing. PLoS ONE. 2015;10(1):e0116528.
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Microarray and NGS
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217
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2015
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Mothe T, Sultanpuram VR. Metagenomic analysis of Lonar soda lake samples.Int J Adv Res Biol Sci. 2015
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NGS
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216
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2014
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Saint M, Sawhney S, Sinha I, et al. The TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation. Mol Cell Biol. 2014;34(9):1547-63.
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Microarray services
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215
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2014
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Beta M, Khetan V, Chatterjee N, et al. EpCAM knockdown alters microRNA expression in retinoblastoma--functional implication of EpCAM regulated miRNA in tumor progression. PLoS ONE. 2014;9(12):e114800.
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Microarray
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214
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2014
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Panyakampol J, Cheevadhanarak S, Sutheeworapong S, et al. Physiological and transcriptional responses to high temperature in Arthrospira (Spirulina) platensis C1. Plant Cell Physiol. 2014
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Microarray
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213
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2014
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Verma A, Rajput S, Kumar S, De S, Chakravarty AK, Kumar R, Datta TK. Differential histone modification status of spermatozoa in relation to fertility of Buffalo bulls. Journal of Cellular Biochemistry. 2014
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Array Design
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212
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2014
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Bahamondea PA, McMasterb ME, Servosc MR, Martyniuka CJ, Munkittricka KR. Molecular pathways associated with the intersex condition in rainbow darter (Etheostoma caeruleum) following exposures to municipal wastewater in the Grand River basin, ON, Canada. Aquatic Toxicology J. 2014.
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NGS Service
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211
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2014
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Dhamija N, Choudhary D, Ladha JS, Pillai B, Mitra D. Tat predominantly associates with host promoter elements in HIV-1 infected T-cells: regulatory basis of transcriptional repression of c-Rel. FEBS J. 2014
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Microarray
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210
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2014
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Kamala S, Makeshkumar T, Sreekumar J, Chakrabarti SK.Whole transcriptome sequencing of diseased elephant foot yam reveals complete genome sequence of dasheen mosaic virus. Virology Reports. 2014
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NGS Service
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209
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2014
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Jagtap, J.C., et al. Secretory prostate apoptosis response (Par)-4 sensitizes multicellular spheroids (MCS) of glioblastoma multiforme cells to tamoxifen-induced cell death. FEBS Open Bio. 2014
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Microarray
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208
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2014
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Baloni P, Padiadpu J, Singh A, Gupta KR, Chandra N. Identifying feasible metabolic routes in Mycobacterium smegmatis and possible alterations under diverse nutrient conditions. BMC Microbiol. 2014;14(1):276.
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Array Design
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207
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2014
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Devi V, Yadav E, Rao T, Satheesh K, Suresh P, Manasa B.Nucleotide Sequencing and Phylogenetic Analysis Using PCR Amplicons of U3 Gene of Jaagsiekte Sheep Retrovirus (JSRV) Detected in Natural Cases of Ovine Pulmonary Adenocarcinoma in India. Open Journal of Veterinary Medicine. 2014
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NGS
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206
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2014
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Tuteja N, Sahoo RK, Huda KMK, Tula S, Renu T.OsBAT1 Augments Salinity Stress Tolerance by Enhancing Detoxification of ROS and Expression of Stress-Responsive Genes in Transgenic Rice. Plant Molecular Biology Reporter. 2014
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Microarray
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205
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2014
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Snijesh VP, Singh S, Vennila JJ. Rheumatoid Arthritis Candidate Genes Identification by Investigating Core and Periphery Interaction Structures. Computational Intelligence in Medical Informatics Journal. 2014
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Biointerpreter
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204
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2014
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Prakash P, Ghosliya D, Gupta V. Identification of conserved and novel microRNAs in Catharanthus roseus by deep sequencing and computational prediction of their potential targets.Gene.2014
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NGS service
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203
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2014
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Boopathi PA, Subudhi AK, Garg S, et al. An in vivo Transcriptome Dataset of Natural Antisense Transcripts from Plasmodium falciparum Clinical Isolates.J Genomics Data.2014
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Microarray
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202
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2014
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Taranua I, Marina ED, Pistola GC, et al.Exposure to zearalenone mycotoxin alters in vitro porcine intestinal epithelial cells by differential gene expression. ScienceDirect. 2014
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Microarray
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201
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2014
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Snijesh. V.P, Singh S. Network Based Approach for Understanding the Chondrocyte Biology for Rheumatoid Arthritis. IJIRCCE. 2014
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Biointerpreter
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200
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2014
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Cartagena JA, Seki M, Tanaka M, Yamauchi T, Sato S, Hirakawa H, Tsuge T. Gene Expression Profiles in Jatropha Under Drought Stress and During Recovery. Springer US. 2014
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Microarray
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199
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2014
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Likhoshvay A, Lomakina A, Grachev M. The complete alk sequences of Rhodococcus erythropolis from Lake Baikal. Springer Plus. 2014
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NGS service
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198
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2014
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BNV Priya , K Mahavishnan, DS Gurumurthy, H Bindumadhava, Upadhyay AP, Sharma NK. Fulvic Acid (FA) for Enhanced Nutrient Uptake and Growth: Insights from Biochemical and Genomic Studies. Journal of Crop Improvement. 2014
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NGS service
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197
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2014
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Patino LC, Battu R, Ortega-Recalde O, Nallathambi J, Anandula VR, et al. Exome Sequencing Is an Efficient Tool for Variant Late-Infantile Neuronal Ceroid Lipofuscinosis Molecular Diagnosis. PLoS ONE. 2014
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NGS service
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196
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2014
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Aiyaz M, Bipin C, Pantulwar V, Mugasimangalam R, Shanley CA, Ordway DJ, Orme IA. Whole genome response in guinea pigs infected with the high virulence strain Mycobacterium tuberculosis TT372. Tuberculosis J. 2014
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Microarray
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195
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2014
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Upadhyay S, Phukan UJ, Mishra S, Shukla RK. De novo leaf and root transcriptome analysis identified novel genes involved in Steroidal sapogenin biosynthesis in Asparagus racemosus. BMC Genomics. 2014;15(1):746.
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NGS service
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194
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2014
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Agrawal R, Pandey P, Jha P, Dwivedi V, Sarkar C, Kulshreshtha R. Hypoxic signature of microRNAs in glioblastoma: insights from small RNA deep sequencing. BMC Genomics. 2014;15(1):686.
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Microarray
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193
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2014
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Biswal DK, Chatterjee A, Bhattacharya A, Tandon V. The mitochondrial genome of Paragonimus westermani (Kerbert, 1878), the Indian isolate of the lung fluke representative of the family Paragonimidae (Trematoda). PeerJ. 2014
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SeqQC and NGS service
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192
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2014
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Kumar KV, Vijayachari P, Raj RV, et al. Expression microarray of leptospiral strains recovered from the patients with pulmonary haemorrhages-a special reference to fatal complications. Int.J.Curr.Microbiol.App.Sci. 2014
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Microarray
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191
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2014
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Shashni R, Qayyum MZ, Vishalini V, Dey D, Sen R. Redundancy of primary RNA-binding functions of the bacterial transcription terminator Rho. Nucleic Acids Res. 2014
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Microarray
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190
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2014
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Ahmad HM, Muiwo P, Ramachandran SS, et al. miR-22 regulates expression of oncogenic Neuro-epithelial transforming gene 1, NET1. FEBS J. 2014
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Microarray
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189
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2014
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Rastogi S, Meena S, Bhattacharya A, et al. De novo sequencing and comparative analysis of holy and sweet basil transcriptomes. BMC Genomics. 2014;15(1):588.
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NGS
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188
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2014
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Boopathi PA, Subudhi AK, Garg S, et al. Dataset of Natural Antisense Transcripts in P. vivax clinical isolates derived using custom designed strand-specific microarray.J Genomics Data.2014
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Microarray
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187
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2014
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Bellale E, Naik M, Vb V, et al. Diarylthiazole: an anti-mycobacterial scaffold potentially targeting PrrB-PrrA two component system. J Med Chem. 2014
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Microarray
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186
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2014
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Verma A, Rajput S, De S, Kumar R,CK Atish, KD Tirtha. Genome-wide profiling of sperm DNA methylation in relation to buffalo (Bubalus bubalis) bull fertility.J Theriogenology.2014
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Biointerpreter
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185
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2014
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Nagaraj S, Raghavan AV, Rao SN, Manjappara UV. Obestatin and Nt8U influence glycerolipid metabolism and PPAR gamma signaling in mice. Int J Biochem Cell Biol. 2014
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Biointerpreter
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184
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2014
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Banu SA, Huda KMK, Sahoo KR, et al. Pea p68 Imparts Salinity Stress Tolerance in Rice by Scavenging of ROS-Mediated H2O2 and Interacts with Argonaute. J Plant Molecular Biology.2014
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Microarray
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183
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2014
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Dhanjala S, Singha KA, Singh S. Global Gene Expression Analysis of Bacterial Stress Response to Elevated Concentrations of Toxic Metalloids—Selenium and Arsenic. J Geomicrobiology. 2014
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Earray and Biointerpreter
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182
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2014
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Mruthyunjaya S, Parveen D, Shah RD, et al. Gene expression analysis of laminin-1-induced neurite outgrowth in human mesenchymal stem cells derived from bone marrow. J Biomed Mater Res A. 2014
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Microarray
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181
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2014
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Priya S, Nigam A, Bajpai P, Kumar S. Diethyl Maleate Inhibits MCA+TPA Transformed Cell Growth via Modulation of GSH, MAPK, and Cancer Pathways. Chem Biol Interact. 2014
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Biointerpreter
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180
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2014
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Kumar M, Gantasala NP, Roychowdhury T, et al. De Novo Transcriptome Sequencing and Analysis of the Cereal Cyst Nematode, Heterodera avenae. PLoS ONE. 2014;9(5):e96311.
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NGS Service
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179
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2014
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Ghosh dasgupta M, George BS, Bhatia A, Sidhu OP. Characterization of Withania somnifera Leaf Transcriptome and Expression Analysis of Pathogenesis - Related Genes during Salicylic Acid Signaling. PLoS ONE. 2014;9(4):e94803.
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NGS Service
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178
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2014
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Ella KM, Kandaswamy S. Vaccine Composition Comprising an Inactivated Chikungunya Virus strain. US Patent Application Publication. 2014
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NGS Service
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177
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2014
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Janbon G, Ormerod KL, Paulet D, et al. Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation. PLoS Genet. 2014.
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NGS Service
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176
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2014
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Chamoli M, Singh A, Malik Y, Mukhopadhyay A. A novel kinase regulates dietary restriction-mediated longevity in Caenorhabditis elegans. Aging Cell. 2014
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Microarray Service
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175
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2014
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Subudhi AK, Boopathi PA, Garg S, et al. Natural antisense transcripts in Plasmodium falciparum isolates from patients with complicated malaria. Exp Parasitol. 2014
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Microarray Service
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174
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2014
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Saint M, Sawhney S, Sinha I, et al. TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation. Mol Cell Biol. 2014
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Microarray Service
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173
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2014
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Pillai S, Behra R, Nestler H, Suter MJ, Sigg L, Schirmer K. Linking toxicity and adaptive responses across the transcriptome, proteome, and phenotype of Chlamydomonas reinhardtii exposed to silver. Proc Natl Acad Sci USA. 2014;111(9):3490-5.
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E Array Design
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172
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2014
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Kureel J, Dixit M, Tyagi AM, et al. miR-542-3p suppresses osteoblast cell proliferation and differentiation, targets BMP-7 signaling and inhibits bone formation. Cell Death Dis. 2014;5:e1050.
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Microarray Service
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171
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2014
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Ghag SB, Shekhawat UK, Ganapathi TR. Host-induced post-transcriptional hairpin RNA-mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana. Plant Biotechnol J. 2014;
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NGS services
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170
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2014
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Dabir SS, Das D, Nallathambi J, Mangalesh S, Yadav NK, Schouten JS. Differential systemic gene expression profile in patients with diabetic macular edema: Responders versus nonresponders to standard treatment. Indian J Ophthalmol. 2014;62(1):66-73.
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Microarray and Biointerpreter
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169
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2014
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Avisetti DR, Babu KS, Kalivendi SV. Activation of p38/JNK Pathway Is Responsible for Embelin Induced Apoptosis in Lung Cancer Cells: Transitional Role of Reactive Oxygen Species. PLoS ONE. 2014;9(1):e87050.
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Microarray and Biointerpreter
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168
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2014
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Baranski M, Gopikrishna G, Robinson NA, et al. The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs. PLoS ONE. 2014;9(1):e85413.
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RNA extraction
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167
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2013
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Tiruvayipati S, Bhassu S, Kumar N, et al. Genome anatomy of the gastrointestinal pathogen, Vibrio parahaemolyticus of crustacean origin. Gut Pathog. 2013;5(1):37.
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NGS service
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166
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2013
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Thomas A, Mahantshetty U, Kannan S, et al. Expression profiling of cervical cancers in Indian women at different stages to identify gene signatures during progression of the disease. Cancer Med. 2013;2(6):836-48.
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Biointerpreter
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165
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2013
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Aravindraja C, Viszwapriya D, Karutha pandian S. Ultradeep 16S rRNA sequencing analysis of geographically similar but diverse unexplored marine samples reveal varied bacterial community composition. PLoS ONE. 2013;8(10):e76724.
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NGS service
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164
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2013
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Paul S, Kundu A, Pal A. Identification and expression profiling of Vigna mungo microRNAs from leaf small RNA transcriptome by deep sequencing. J Integr Plant Biol. 2014;56(1):15-23.
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NGS Service
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163
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2013
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Huda KM, Banu MS, Garg B, Tula S, Tuteja R, Tuteja N. OsACA6, a P-type IIB Ca²⁺ ATPase promotes salinity and drought stress tolerance in tobacco by ROS scavenging and enhancing the expression of stress-responsive genes. Plant J. 2013;76(6):997-1015.
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162
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2013
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A bioinformatics pipeline for sequence to structure: A case study with a Cml patient undergoing treatment with imatinib.
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SeqQC
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161
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2013
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Thomas E, Roman E, Claypool S, Manzoor N, Pla J, Panwar SL. Mitochondria influence CDR1 efflux pump activity, Hog1-mediated oxidative stress pathway, iron homeostasis, and ergosterol levels in Candida albicans. Antimicrob Agents Chemother. 2013;57(11):5580-99.
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160
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2013
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Garg R, Verma M, Agrawal S, Shankar R, Majee M, Jain M. Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata, Provides Novel Insights into the Salinity and Submergence Tolerance Factors. DNA Res. 2014;21(1):69-84.
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NGS service
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159
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2013
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Boopathi PA, Subudhi AK, Garg S, et al. Revealing natural antisense transcripts from Plasmodium vivax isolates: evidence of genome regulation in complicated malaria. Infect Genet Evol. 2013;20:428-43.
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E Array Design
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158
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2013
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Wang B, Niu D, Lam TH, Xiao Z, Ren EC. Mapping the p53 transcriptome universe using p53 natural polymorphs. Cell Death Differ. 2014;21(4):521-32.
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NGS service
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157
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2013
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Rao PP, Reddy YN, Ganesh K, Nair SG, Niranjan V, Hegde NR. Deep sequencing as a method of typing bluetongue virus isolates. J Virol Methods. 2013;193(2):314-9.
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SeqQC
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156
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2013
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Crudo A, Petropoulos S, Suderman M, et al. Effects of antenatal synthetic glucocorticoid on glucocorticoid receptor binding, DNA methylation, and genome-wide mRNA levels in the fetal male hippocampus. Endocrinology. 2013;154(11):4170-81.
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E Array Design
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155
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2013
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Walker R, Gissot M, Huot L, et al. Toxoplasma transcription factor TgAP2XI-5 regulates the expression of genes involved in parasite virulence and host invasion. J Biol Chem. 2013;288(43):31127-38.
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Microarray Service
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154
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2013
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Biswal DK, Ghatani S, Shylla JA, et al. An integrated pipeline for next generation sequencing and annotation of the complete mitochondrial genome of the giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899. PeerJ. 2013;1:e207.
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NGS Service
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153
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2013
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Mudalkar S, Golla R, Ghatty S, Reddy AR. De novo transcriptome analysis of an imminent biofuel crop, Camelina sativa L. using Illumina GAIIX sequencing platform and identification of SSR markers. Plant Mol Biol. 2014;84(1-2):159-71.
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NGS service
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152
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2013
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Roth D, Finkelshtein A, Ingham C, et al. Identification and characterization of a highly motile and antibiotic refractory subpopulation involved in the expansion of swarming colonies of Paenibacillus vortex. Environ Microbiol. 2013;15(9):2532-44.
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151
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2013
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Wang B, Niu D, Lai L, Ren EC. p53 increases MHC class I expression by upregulating the endoplasmic reticulum aminopeptidase ERAP1. Nat Commun. 2013;4:2359.
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NGS service
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150
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2013
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Kumar S, Vikram S, Raghava GP. Genome annotation of Burkholderia sp. SJ98 with special focus on chemotaxis genes. PLoS ONE. 2013;8(8):e70624.
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NGS service
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149
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2013
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Sasibhushan S, C g p R, Ponnuvel KM. Genome wide microarray based expression profiles during early embryogenesis in diapause induced and non-diapause eggs of polyvoltine silkworm Bombyx mori. Genomics. 2013;102(4):379-87.
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Microarray service
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148
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2013
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Das M, Saudagar P, Sundar S, Dubey VK. Miltefosine-unresponsive Leishmania donovani has a greater ability than miltefosine-responsive L. donovani to resist reactive oxygen species. FEBS J. 2013;280(19):4807-15.
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Microarray service
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147
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2013
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Fanibunda SE, Modi DN, Bandivdekar AH. HIV gp120 induced gene expression signatures in vaginal epithelial cells. Microbes Infect. 2013;15(12):806-15.
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Microarray service
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146
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2013
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A Novel Cuckoo Search Algorithm for Genome Sequence Assembly
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Microarray service
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145
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2013
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Walker CG, Littlejohn MD, Meier S, Roche JR, Mitchell MD. DNA methylation is correlated with gene expression during early pregnancy in Bos taurus. Physiol Genomics. 2013;45(7):276-86.
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E Array Design
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144
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2013
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Fréalle E, Aliouat-denis CM, Delhaes L, Hot D, Dei-cas E. Transcriptomic insights into the oxidative response of stress-exposed Aspergillus fumigatus. Curr Pharm Des. 2013;19(20):3713-37.
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E Array Design
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143
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2013
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Poulami Das. Identification of Specific Genetic Alterations in Cervical Cancer by Genome wide LOH and Copy Number Analysis.Indian ETD Repository. 2013.
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NGS service
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142
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2013
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Banerjee S, Khandelia P, Melangath G, Bashir S, Nagampalli V, Vijayraghavan U. Splicing functions and global dependency on fission yeast slu7 reveal diversity in spliceosome assembly. Mol Cell Biol. 2013;33(16):3125-36..
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141
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2013
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Ortega-recalde O, Vergara JI, Fonseca DJ, et al. Whole-exome sequencing enables rapid determination of xeroderma pigmentosum molecular etiology. PLoS ONE. 2013;8(6):e64692.
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NGS service
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140
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2013
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Sellathurai J, Cheedipudi S, Dhawan J, Schrøder HD. A novel in vitro model for studying quiescence and activation of primary isolated human myoblasts. PLoS ONE. 2013;8(5):e64067.
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Biointerpreter and Microarray service
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139
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2013
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Chakraborty U, Mohamed A, Kakade P, Mugasimangalam RC, Sadhale PP, Sanyal K. A stable hybrid containing haploid genomes of two obligate diploid Candida species. Eukaryotic Cell. 2013;12(8):1061-71.
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Microarray service
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138
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2013
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Zhang S, Guo T, Chan H, Sze SK, Koh CG. Integrative transcriptome and proteome study to identify the signaling network regulated by POPX2 phosphatase. J Proteome Res. 2013;12(6):2525-36.
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Biointerpreter
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137
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2013
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ArgP protein of Escherichia coli: roles in osmoregulation, gene regulation and inter-relationship with LysG of Corynebacterium glutamicum,
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Gene expression and Microarray Service
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136
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2013
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Sangwan RS, Tripathi S, Singh J, Narnoliya LK, Sangwan NS. De novo sequencing and assembly of Centella asiatica leaf transcriptome for mapping of structural, functional and regulatory genes with special reference to secondary metabolism. Gene. 2013;525(1):58-76.
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NGS Service
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135
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2013
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Agarwal P, Srivastava R, Srivastava AK, Ali S, Datta M. miR-135a targets IRS2 and regulates insulin signaling and glucose uptake in the diabetic gastrocnemius skeletal muscle. Biochim Biophys Acta. 2013;1832(8):1294-303.
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Gene Expression
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134
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2013
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Shwetha S, Gouthamchandra K, Chandra M, Ravishankar B, Khaja MN, Das S. Circulating miRNA profile in HCV infected serum: novel insight into pathogenesis. Sci Rep. 2013;3:1555.
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Microarray Service
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133
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2013
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Priya S, Nigam A, Bajpai P, Kumar S. Dysregulation of pathways involved in the processing of cancer and microenvironment information in MCA + TPA transformed C3H/10T1/2 cells. In Vitro Cell Dev Biol Anim. 2013;49(4):295-305.
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Biointerpreter
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132
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2013
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Kumar S, Nigam A, Priya S, Bajpai P, Budhwar R. Lipoic acid prevents Cr(6+) induced cell transformation and the associated genomic dysregulation. Environ Toxicol Pharmacol. 2013;36(1):182-93.
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Biointerpreter
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131
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2013
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Annadurai RS, Neethiraj R, Jayakumar V, et al. De Novo transcriptome assembly (NGS) of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids. PLoS ONE. 2013;8(2):e56217.
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NGS Service and SeqQc
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130
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2013
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Thakur J, Sanyal K. Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans. Genome Res. 2013;23(4):638-52.
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Microarray service
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129
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2013
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Deepa PR, Vandhana S, Krishnakumar S. Fatty acid synthase inhibition induces differential expression of genes involved in apoptosis and cell proliferation in ocular cancer cells. Nutr Cancer. 2013;65(2):311-6.
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Biointerpreter and Microarray service
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128
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2013
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A Targeted Enrichment Strategy for Massively Parallel Sequencing of Angiosperm Plastid Genomes
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Earray design and NGS service
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127
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2013
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Jain S, Chodisetti SB, Agrewala JN. Combinatorial signaling through TLR-2 and CD86 augments activation and differentiation of resting B cells. PLoS ONE. 2013;8(1):e54392.
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Biointerpreter and E Array Design
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126
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2013
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Satija NK, Sharma D, Afrin F, Tripathi RP, Gangenahalli G. High throughput transcriptome profiling of lithium stimulated human mesenchymal stem cells reveals priming towards osteoblastic lineage. PLoS ONE. 2013;8(1):e55769.
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Microarray Service
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125
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2013
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Beta M, Venkatesan N, Vasudevan M, Vetrivel U, Khetan V, Krishnakumar S. Identification and Insilico Analysis of Retinoblastoma Serum microRNA Profile and Gene Targets Towards Prediction of Novel Serum Biomarkers. Bioinform Biol Insights. 2013;7:21-34.
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Microarray Service
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124
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2013
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Basu M, Roy SS. Wnt/β-catenin pathway is regulated by PITX2 homeodomain protein and thus contributes to the proliferation of human ovarian adenocarcinoma cell, SKOV-3. J Biol Chem. 2013;288(6):4355-67.
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Microarray Service
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123
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2012
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Agarwal G, Jhanwar S, Priya P, et al. Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PLoS ONE. 2012;7(12):e52443.
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NGS Service
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122
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2012
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Pluess-li Y, Bongiovanni S, Oakeley EJ, Johnson KJ, Staedtler F. The virtuous technology cycle concept and its application in next-generation sequencing. Drug Discov Today. 2012;17(17-18):1015-22.
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121
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2012
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Antibiotic Resistance in Co-Culture Biofilm of Listeria monocytogenesJ0161.
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120
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2012
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Genome sequence and comparative genomics of a Salmonella enterica serovar Typhi Strain in Malaysia
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NGS Service
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119
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2012
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Majumdar SD, Vashist A, Dhingra S, et al. Appropriate DevR (DosR)-mediated signaling determines transcriptional response, hypoxic viability and virulence of Mycobacterium tuberculosis. PLoS ONE. 2012;7(4):e35847.
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Microarray Service
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118
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2012
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Rai R, Ranjan M, Pradhan BB, Chatterjee S. Atypical regulation of virulence-associated functions by a diffusible signal factor in Xanthomonas oryzae pv. oryzae. Mol Plant Microbe Interact. 2012;25(6):789-801.
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E Array Design
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117
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2012
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Kato-maeda M, Shanley CA, Ackart D, et al. Beijing sublineages of Mycobacterium tuberculosis differ in pathogenicity in the guinea pig. Clin Vaccine Immunol. 2012;19(8):1227-37.
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Microarray Service
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116
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2012
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Mishra S, Bhagavat R, Chandra N, Vijayarangan N, Rajeswari H, Ajitkumar P. Cloning, expression, purification, and biochemical characterisation of the FIC motif containing protein of Mycobacterium tuberculosis. Protein Expr Purif. 2012;86(1):58-67.
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115
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2012
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Rao PP, Reddy YN, Hegde NR. Complete genome sequence of bluetongue virus serotype 9: implications for serotyping. J Virol. 2012;86(15):8333.
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NGS Service
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114
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2012
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Jain R, Dey B, Tyagi AK. Development of the first oligonucleotide microarray for global gene expression profiling in guinea pigs: defining the transcription signature of infectious diseases. BMC Genomics. 2012;13:520.
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Microarray Service
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113
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2012
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Development of TILLING by sequencing platform towards enhanced leaf yield in tobacco
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112
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2012
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Kumar S, Randhawa A, Ganesan K, Raghava GP, Mondal AK. Draft genome sequence of salt-tolerant yeast Debaryomyces hansenii var. hansenii MTCC 234. Eukaryotic Cell. 2012;11(7):961-2.
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NGS Service
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111
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2012
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James R, Vishwakarma S, Chivukula IV, et al. EGFR targeting monoclonal antibody combines with an mTOR inhibitor and potentiates tumor inhibition by acting on complementary signaling hubs. Cancer Med. 2012;1(2):114-27.
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Biointerpreter and Microarray
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110
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2012
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Robinson N, Sahoo PK, Baranski M, et al. Expressed sequences and polymorphisms in rohu carp (Labeo rohita, Hamilton) revealed by mRNA-seq. Mar Biotechnol. 2012;14(5):620-33.
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109
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2012
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Tirumalai PS, Prakash S. Expression of virulence genes by Listeria monocytogenes J0161 in natural environment. Braz J Microbiol. 2012;43(2):834-43.
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E Array Design
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108
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2012
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Sreenivasan S, Thirumalai K, Krishnakumar S. Expression profile of genes regulated by curcumin in Y79 retinoblastoma cells. Nutr Cancer. 2012;64(4):607-16.
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Biointerpreter
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107
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2012
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Baddam R, Kumar N, Thong KL, et al. Genetic fine structure of a Salmonella enterica serovar Typhi strain associated with the 2005 outbreak of typhoid fever in Kelantan, Malaysia. J Bacteriol. 2012;194(13):3565-6.
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NGS Service
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106
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2012
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Yap KP, Gan HM, Teh CS, et al. Genome sequence and comparative pathogenomics analysis of a Salmonella enterica Serovar Typhi strain associated with a typhoid carrier in Malaysia. J Bacteriol. 2012;194(21):5970-1.
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NGS Service
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105
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2012
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Kumar S, Kushwaha H, Bachhawat AK, Raghava GP, Ganesan K. Genome sequence of the oleaginous red yeast Rhodosporidium toruloides MTCC 457. Eukaryotic Cell. 2012;11(8):1083-4.
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NGS Service
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104
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2012
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Dutta P, Tanti GK, Sharma S, et al. Global epigenetic changes induced by SWI2/SNF2 inhibitors characterize neomycin-resistant mammalian cells. PLoS ONE. 2012;7(11):e49822.
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Microarray Service
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103
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2012
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Hendre PS, Kamalakannan R, Varghese M. High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform. Plant Biotechnol J. 2012;10(6):646-56.
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NGS Service
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102
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2012
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Ladha J, Sinha S, Bhat V, Donakonda S, Rao SM. Identification of genomic targets of transcription factor AEBP1 and its role in survival of glioma cells. Mol Cancer Res. 2012;10(8):1039-51.
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Biointerpreter
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101
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2012
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Yap KP, Teh CS, Baddam R, et al. Insights from the genome sequence of a Salmonella enterica serovar Typhi strain associated with a sporadic case of typhoid fever in Malaysia. J Bacteriol. 2012;194(18):5124-5.
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NGS Service
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100
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2012
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Stamm P, Ravindran P, Mohanty B, Tan EL, Yu H, Kumar PP. Insights into the molecular mechanism of RGL2-mediated inhibition of seed germination in Arabidopsis thaliana. BMC Plant Biol. 2012;12:179.
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Microarray Service
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99
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2012
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Mechanism Of Action Of Plumbagin In Brca1 Blocked Ovarian Cancer Cells: An Analysis By Suppression Subtractive Hybridization (Ssh) And Micro Array.
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Biointerpreter
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98
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2012
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Vandhana S, Lakshmi TS, Indra D, Deepa PR, Krishnakumar S. Microarray analysis and biochemical correlations of oxidative stress responsive genes in retinoblastoma. Curr Eye Res. 2012;37(9):830-41.
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97
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2012
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Venkatesan N, Krishnakumar S, Deepa PR, Deepa M, Khetan V, Reddy MA. Molecular deregulation induced by silencing of the high mobility group protein A2 gene in retinoblastoma cells. Mol Vis. 2012;18:2420-37.
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Biointerpreter and microarray analysis.
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96
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2012
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Krishna S, Nair A, Cheedipudi S, et al. Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata. Nucleic Acids Res. 2013;41(1):599-616.
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NGS Service
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95
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2012
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Malhotra V, Okon BP, Clark-curtiss JE. Mycobacterium tuberculosis protein kinase K enables growth adaptation through translation control. J Bacteriol. 2012;194(16):4184-96.
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E Array Design
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94
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2012
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Annadurai RS, Jayakumar V, Mugasimangalam RC, et al. Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties. BMC Genomics. 2012;13:663.
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NGS Service
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93
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2012
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Kumar N, Mukhopadhyay AK, Patra R, et al. Next-generation sequencing and de novo assembly, genome organization, and comparative genomic analyses of the genomes of two Helicobacter pylori isolates from duodenal ulcer patients in India. J Bacteriol. 2012;194(21):5963-4.
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NGS Service
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92
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2012
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Shashni R, Mishra S, Kalayani BS, Sen R. Suppression of in vivo Rho-dependent transcription termination defects: evidence for kinetically controlled steps. Microbiology (Reading, Engl). 2012;158(Pt 6):1468-81.
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Microarray Service
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91
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2012
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Diggle CP, Parry DA, Logan CV, et al. Prostaglandin transporter mutations cause pachydermoperiostosis with myelofibrosis. Hum Mutat. 2012;33(8):1175-81.
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Biointerpreter
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90
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2012
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Hu S, Xie G, Zhang DX, et al. Synthesis and biological evaluation of crown ether fused quinazoline analogues as potent EGFR inhibitors. Bioorg Med Chem Lett. 2012;22(19):6301-5.
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BioInterpreter
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89
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2012
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Castellana S, Romani M, Valente EM, Mazza T. A solid quality-control analysis of AB SOLiD short-read sequencing data. Brief Bioinformatics. 2013;14(6):684-95.
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SeqQC
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88
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2012
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Mittal D, Madhyastha DA, Grover A. Genome-wide transcriptional profiles during temperature and oxidative stress reveal coordinated expression patterns and overlapping regulons in rice. PLoS ONE. 2012;7(7):e40899.
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Microarray Service
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87
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2012
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Patra T, Koley H, Ramamurthy T, Ghose AC, Nandy RK. The Entner-Doudoroff pathway is obligatory for gluconate utilization and contributes to the pathogenicity of Vibrio cholerae. J Bacteriol. 2012;194(13):3377-85.
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Gene expression
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86
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2012
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Time-dependant gene expression pattern of Listeria monocytogenes J0161 in biofilms
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E Array Design
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85
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2012
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Gissot M, Walker R, Delhaye S, Huot L, Hot D, Tomavo S. Toxoplasma gondii chromodomain protein 1 binds to heterochromatin and colocalises with centromeres and telomeres at the nuclear periphery. PLoS ONE. 2012;7(3):e32671.
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Microarray Service
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84
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2012
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Bhaskar AS, Gupta N, Rao PV. Transcriptomic profile of host response in mouse brain after exposure to plant toxin abrin. Toxicology. 2012;299(1):33-43.
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NGS Service
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83
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2012
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Baddam R, Thong KL, Avasthi TS, et al. Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients with fatal and nonfatal typhoid fever in Papua New Guinea. J Bacteriol. 2012;194(18):5122-3.
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NGS Service
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82
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2012
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Mittal D, Madhyastha DA, Grover A. Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually. Plant Sci. 2012;197:102-13.
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81
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2011
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The development of molecular tools for detecting the impacts of municipal wastewater effluents(MWWE) on rainbow darter (Etheostoma caeruleum)
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Microarray
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80
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2011
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Leibman D, Wolf D, Saharan V, et al. A high level of transgenic viral small RNA is associated with broad potyvirus resistance in cucurbits. Mol Plant Microbe Interact. 2011;24(10):1220-38.
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Microarray Design
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79
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2011
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Bairwa G, Kaur R. A novel role for a glycosylphosphatidylinositol-anchored aspartyl protease, CgYps1, in the regulation of pH homeostasis in Candida glabrata. Mol Microbiol. 2011;79(4):900-13.
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Microarray service and E Arrays design
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78
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2011
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Gkikopoulos T, Schofield P, Singh V, et al. A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization. Science. 2011;333(6050):1758-60. http://www.sciencemag.org/content/333/6050/1758.abstract
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NGS Service
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77
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2011
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Kedia-mokashi NA, Mugasimangalam R, Aiyaz M, Mukherjee S, Balasinor NH. Aberrant expression of imprinted genes in post-implantation rat embryos. Life Sci. 2011;88(13-14):634-43.
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Gene Expression
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76
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2011
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Moore DA, Shah NS. Alternative methods of diagnosing drug resistance--what can they do for me?. J Infect Dis. 2011;204 Suppl 4:S1110-9.
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75
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2011
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Anand T, Vijayaraghavan R, Rao PV, Bansal I, Bhattacharya BK. Attenuation of sulfur mustard toxicity by S-2(2-aminoethylamino)ethyl phenyl sulfide (DRDE-07) in mouse liver. Toxicol Mech Methods. 2011;21(8):596-605.
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Biointerpreter
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74
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2011
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Hameed S, Dhamgaye S, Singh A, Goswami SK, Prasad R. Calcineurin signaling and membrane lipid homeostasis regulates iron mediated multidrug resistance mechanisms in Candida albicans. PLoS ONE. 2011;6(4):e18684.
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Microarray Service
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73
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2011
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Kumar NV, Rangarajan PN. Catabolite repression of phosphoenolpyruvate carboxykinase by a zinc finger protein under biotin- and pyruvate carboxylase-deficient conditions in Pichia pastoris. Microbiology (Reading, Engl). 2011;157(Pt 12):3361-9.
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E Array Design
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72
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2011
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Jain S, Chodisetti SB, Agrewala JN. CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cells. PLoS ONE. 2011;6(6):e20651.
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E Array Design and Biointerpreter
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71
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2011
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Kaur K, Pandey AK, Srivastava S, Srivastava AK, Datta M. Comprehensive miRNome and in silico analyses identify the Wnt signaling pathway to be altered in the diabetic liver. Mol Biosyst. 2011;7(12):3234-44.
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miRNA profiling
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70
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2011
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Mirbahai L, Williams TD, Zhan H, Gong Z, Chipman JK. Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis. BMC Genomics. 2011;12:3.
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NGS Service
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69
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2011
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Garg R, Patel RK, Tyagi AK, Jain M. De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res. 2011;18(1):53-63.
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NGS Service
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68
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2011
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Differential Coexpression of Mex Efflux Pumps in a Clinical Strain of Metallo-β-lactamase-Producing Pseudomonas aeruginosa During the Stepwise Evolution of Resistance to Aminoglycosides
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Gene Expression
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67
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2011
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Karim AF, Chandra P, Chopra A, et al. Express path analysis identifies a tyrosine kinase Src-centric network regulating divergent host responses to Mycobacterium tuberculosis infection. J Biol Chem. 2011;286(46):40307-19.
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Microarray Service
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66
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2011
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Siddavattam D, Karegoudar TB, Mudde SK, et al. Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide. J Bacteriol. 2011;193(19):5598-9.
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NGS Service
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65
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2011
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Avasthi TS, Kumar N, Baddam R, et al. Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India. J Bacteriol. 2011;193(16):4272-3.
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NGS Service
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64
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2011
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Avasthi TS, Devi SH, Taylor TD, et al. Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient. J Bacteriol. 2011;193(13):3385-6.
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NGS Service
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63
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2011
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Hendre PS, Kamalakannan R, Varghese M. High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform. Plant Biotechnol J. 2012;10(6):646-56.
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NGS Service
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62
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2011
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Shang S, Harton M, Tamayo MH, et al. Increased Foxp3 expression in guinea pigs infected with W-Beijing strains of M. tuberculosis. Tuberculosis (Edinb). 2011;91(5):378-85.
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E Array Design
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61
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2011
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Paranjape AN, Mandal T, Mukherjee G, Kumar MV, Sengupta K, Rangarajan A. Introduction of SV40ER and hTERT into mammospheres generates breast cancer cells with stem cell properties. Oncogene. 2012;31(15):1896-909.
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Earray design
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60
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2011
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Zhidkov I, Nagar T, Mishmar D, Rubin E. MitoBamAnnotator: A web-based tool for detecting and annotating heteroplasmy in human mitochondrial DNA sequences. Mitochondrion. 2011;11(6):924-8.
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Earray design
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59
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2011
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Kumar S, Dey D, Hasan G. Patterns of gene expression in Drosophila InsP3 receptor mutant larvae reveal a role for InsP3 signaling in carbohydrate and energy metabolism. PLoS ONE. 2011;6(8):e24105.
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Microarray Service and Biointerpreter
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58
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2011
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Pathak A, Shanker R, Garg SK, Manickam N. Profiling of biodegradation and bacterial 16S rRNA genes in diverse contaminated ecosystems using 60-mer oligonucleotide microarray. Appl Microbiol Biotechnol. 2011;90(5):1739-54.
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Microarray Service
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57
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2011
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Marbaniang CN, Gowrishankar J. Role of ArgP (IciA) in lysine-mediated repression in Escherichia coli. J Bacteriol. 2011;193(21):5985-96.
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Microarray Service
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56
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2011
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Heine H. TLRs, NLRs and RLRs: innate sensors and their impact on allergic diseases--a current view. Immunol Lett. 2011;139(1-2):14-24.
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55
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2011
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Regulated expression of CXCR4 constitutive active mutants revealed the up-modulated chemotaxis and up-regulation of genes crucial for CXCR4 mediated homing and engraftment of hematopoietic stem/progenitor cells.
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Microarray Service and Biointerpreter
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54
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2011
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Sharma A, Mishra M, Ram KR, Kumar R, Abdin MZ, Chowdhuri DK. Transcriptome analysis provides insights for understanding the adverse effects of endosulfan in Drosophila melanogaster. Chemosphere. 2011;82(3):370-6.
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53
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2011
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Sen M, Shah B, Rakshit S, et al. UDP-glucose 4, 6-dehydratase activity plays an important role in maintaining cell wall integrity and virulence of Candida albicans. PLoS Pathog. 2011;7(11):e1002384.
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Microarray Service
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52
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2011
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Nageshan RK, Roy N, Hehl AB, Tatu U. Post-transcriptional repair of a split heat shock protein 90 gene by mRNA trans-splicing. J Biol Chem. 2011;286(9):7116-22.
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NGS Service
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51
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2011
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Babu MM, Sridhar J, Gunasekaran P. Global transcriptome analysis of Bacillus cereus ATCC 14579 in response to silver nitrate stress. J Nanobiotechnology. 2011;9:49.
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Microarray Service
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50
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2011
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Bajaj J, Maliekal TT, Vivien E, et al. Notch signaling in CD66+ cells drives the progression of human cervical cancers. Cancer Res. 2011;71(14):4888-97.
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Biointerpreter
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49
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2010
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Kumar N, Pethe P, Bhartiya D. Role of TGFbeta and myofibroblasts in supporting the propagation of human embryonic stem cells in vitro. Int J Dev Biol. 2010;54(8-9):1329-36.
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Biointerpreter
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48
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2010
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Nair P, Melarkode R, Rajkumar D, Montero E. CD6 synergistic co-stimulation promoting proinflammatory response is modulated without interfering with the activated leucocyte cell adhesion molecule interaction. Clin Exp Immunol. 2010;162(1):116-30.
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Microarray Service
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47
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2010
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Ordway DJ, Shanley CA, Caraway ML, et al. Evaluation of standard chemotherapy in the guinea pig model of tuberculosis. Antimicrob Agents Chemother. 2010;54(5):1820-33.
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Microarray and NGS Service
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46
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2010
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Bapat SA, Krishnan A, Ghanate AD, Kusumbe AP, Kalra RS. Gene expression: protein interaction systems network modeling identifies transformation-associated molecules and pathways in ovarian cancer. Cancer Res. 2010;70(12):4809-19.
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Gene expression
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45
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2010
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Saha B, Jyothi prasanna S, Chandrasekar B, Nandi D. Gene modulation and immunoregulatory roles of interferon gamma. Cytokine. 2010;50(1):1-14.
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NGS Service
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44
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2010
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Sirota-madi A, Olender T, Helman Y, et al. Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments. BMC Genomics. 2010;11:710.
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NGS Service and E Array Design
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43
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2010
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Chattopadhyay I, Singh A, Phukan R, et al. Genome-wide analysis of chromosomal alterations in patients with esophageal squamous cell carcinoma exposed to tobacco and betel quid from high-risk area in India. Mutat Res. 2010;696(2):130-8.
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Biointerpreter & Gene expression
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42
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2010
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Mitra M, Kandalam M, Verma RS, Umamaheswari K, Krishnakumar S. Genome-wide changes accompanying the knockdown of Ep-CAM in retinoblastoma. Mol Vis. 2010;16:828-42.
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Biointerpreter and Microarray Service
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41
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2010
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Ladha J, Donakonda S, Agrawal S, et al. Glioblastoma-specific protein interaction network identifies PP1A and CSK21 as connecting molecules between cell cycle-associated genes. Cancer Res. 2010;70(16):6437-47.
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Biointerpreter and Microarray Service
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40
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2010
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Interleukin-4 induced leukocyte differentiation - Näytä kaikki kuvailutiedot
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Gene expression
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39
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2010
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Method for analyzing dynamic detectable events at the single molecule level – United Stated Patent , US 7668697 B2
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NGS Service
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38
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2010
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Methylketone synthase, production of methylketones in plants and bacteria
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NGS Service
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37
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2010
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Langmann T, Di gioia SA, Rau I, et al. Nonsense mutations in FAM161A cause RP28-associated recessive retinitis pigmentosa. Am J Hum Genet. 2010;87(3):376-81.
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NGS Service
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36
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2010
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Vempati RK, Jayani RS, Notani D, Sengupta A, Galande S, Haldar D. p300-mediated acetylation of histone H3 lysine 56 functions in DNA damage response in mammals. J Biol Chem. 2010;285(37):28553-64.
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Microarray Service
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35
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2010
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Ahlfors H, Limaye A, Elo LL, et al. SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation. Blood. 2010;116(9):1443-53.
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E Array Design
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34
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2010
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Tripathy MK, Ahmed Z, Ladha JS, Mitra D. The cell death regulator GRIM-19 is involved in HIV-1 induced T-cell apoptosis. Apoptosis. 2010;15(12):1453-60.
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33
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2010
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Notani D, Gottimukkala KP, Jayani RS, et al. Global regulator SATB1 recruits beta-catenin and regulates T(H)2 differentiation in Wnt-dependent manner. PLoS Biol. 2010;8(1):e1000296.
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Microarray service
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32
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2010
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Systems for gene expression array analysis - United States Patent, US 7856320 B2
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31
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2010
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Chattopadhyay I, Singh A, Phukan R, et al. Genome-wide analysis of chromosomal alterations in patients with esophageal squamous cell carcinoma exposed to tobacco and betel quid from high-risk area in India. Mutat Res. 2010;696(2):130-8.
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Biointerpreter
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30
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2009
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Radhakrishnan A, Badhrinarayanan N, Biswas J, Krishnakumar S. Analysis of chromosomal aberration (1, 3, and 8) and association of microRNAs in uveal melanoma. Mol Vis. 2009;15:2146-54.
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NGS Service
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29
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2009
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Purbey PK, Singh S, Notani D, Kumar PP, Limaye AS, Galande S. Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1. Mol Cell Biol. 2009;29(5):1321-37.
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Microarray service
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28
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2009
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Kashyap MK, Marimuthu A, Kishore CJ, et al. Genomewide mRNA profiling of esophageal squamous cell carcinoma for identification of cancer biomarkers. Cancer Biol Ther. 2009;8(1):36-46.
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miRNA profiling
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27
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2009
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Core promoter variants (A-20C, T-18C and G-6A) of the angiotensinogen (AGT) gene are not significantly associated with hypertension in patients of Tamilnadu.
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NGS Service
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26
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2009
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Mittal D, Chakrabarti S, Sarkar A, Singh A, Grover A. Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses. Plant Physiol Biochem. 2009;47(9):785-95.
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miRNA Profiling
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25
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2009
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Eswarappa SM, Karnam G, Nagarajan AG, Chakraborty S, Chakravortty D. lac repressor is an antivirulence factor of Salmonella enterica: its role in the evolution of virulence in Salmonella. PLoS ONE. 2009;4(6):e5789.
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Microarray service
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24
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2009
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Kaul-ghanekar R, Singh S, Mamgain H, Jalota-badhwar A, Paknikar KM, Chattopadhyay S. Tumor suppressor protein SMAR1 modulates the roughness of cell surface: combined AFM and SEM study. BMC Cancer. 2009;9:350.
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Microarray service
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23
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2009
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Ben-israel I, Yu G, Austin MB, et al. Multiple biochemical and morphological factors underlie the production of methylketones in tomato trichomes. Plant Physiol. 2009;151(4):1952-64.
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Microarray service
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22
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2009
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Transcriptional Regulation and the Role of Galactose Metabolism in the Virulence of Candida albicans
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Microarray
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21
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2009
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Methylketone Biosynthesis in Tomato F2 Segregant Populations
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Earray design and Biointerpreter
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20
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2009
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Chattopadhyay I, Phukan R, Singh A, et al. Molecular profiling to identify molecular mechanism in esophageal cancer with familial clustering. Oncol Rep. 2009;21(5):1135-46.
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Biointerpreter
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19
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2009
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The joint tissue microarray gene chips explore the molecular mechanism of the development of Barrett's esophagus occurs, Wang Xingwei,
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Biointerpreter
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18
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2008
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Bonfils C, Kalita A, Dubay M, et al. Evaluation of the pharmacodynamic effects of MGCD0103 from preclinical models to human using a novel HDAC enzyme assay. Clin Cancer Res. 2008;14(11):3441-9.
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RnD support
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17
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2008
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Verma-gaur J, Rao SN, Taya T, Sadhale P. Genomewide recruitment analysis of Rpb4, a subunit of polymerase II in Saccharomyces cerevisiae, reveals its involvement in transcription elongation. Eukaryotic Cell. 2008;7(6):1009-18.
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Gene expression
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16
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2008
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Lahiri A, Das P, Chakravortty D. The LysR-type transcriptional regulator Hrg counteracts phagocyte oxidative burst and imparts survival advantage to Salmonella enterica serovar Typhimurium. Microbiology (Reading, Engl). 2008;154(Pt 9):2837-46.
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Gene expression
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15
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2008
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Development of Prodrug 4-Chloro-3-(5-methyl-3-{[4-(2-pyrrolidin-1-ylethoxy)phenyl]amino}-1,2,4-benzotriazin-7-yl)phenyl Benzoate (TG100801) : A Topically Administered Therapeutic Candidate in Clinical Trials for the Treatment of Age-Related Macular Degeneration.
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Biointerpreter
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14
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2008
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Purbey PK, Singh S, Notani D, Kumar PP, Limaye AS, Galande S. Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1. Mol Cell Biol. 2009;29(5):1321-37.
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Microarray service
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13
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2007
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Chattopadhyay I, Kapur S, Purkayastha J, et al. Gene expression profile of esophageal cancer in North East India by cDNA microarray analysis. World J Gastroenterol. 2007;13(9):1438-44.
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Biointerpreter
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12
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2007
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Jalota-badhwar A, Kaul-ghanekar R, Mogare D, Boppana R, Paknikar KM, Chattopadhyay S. SMAR1-derived P44 peptide retains its tumor suppressor function through modulation of p53. J Biol Chem. 2007;282(13):9902-13.
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Gene expression and Microarray service
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11
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2007
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Mantelingu K, Reddy BA, Swaminathan V, et al. Specific inhibition of p300-HAT alters global gene expression and represses HIV replication. Chem Biol. 2007;14(6):645-57.
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Biointerpreter
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10
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2007
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Chattopadhyay I, Kapur S, Purkayastha J, et al. Gene expression profile of esophageal cancer in North East India by cDNA microarray analysis. World J Gastroenterol. 2007;13(9):1438-44.
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Biointerpreter
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9
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2007
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Singh K, Mogare D, Giridharagopalan RO, Gogiraju R, Pande G, Chattopadhyay S. p53 target gene SMAR1 is dysregulated in breast cancer: its role in cancer cell migration and invasion. PLoS ONE. 2007;2(7):e660.
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Microarray Service
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8
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2007
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Noronha G, Barrett K, Boccia A, et al. Discovery of [7-(2,6-dichlorophenyl)-5-methylbenzo [1,2,4]triazin-3-yl]-[4-(2-pyrrolidin-1-ylethoxy)phenyl]amine--a potent, orally active Src kinase inhibitor with anti-tumor activity in preclinical assays. Bioorg Med Chem Lett. 2007;17(3):602-8.
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Biointerpreter
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7
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2007
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Targeting Drug Resistant Mutations Using Novel Binding Interactions - Lessons Learned from Abl-T315I and their Implications in Drug Design . Frontiers in Drug Design & Discovery: Structure-Based Drug Design in the 21st Century
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Biointerpreter
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6
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2006
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Methods and systems for analysis of dynamic biological pathways
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Microarray Service
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5
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2006
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Das C, Hizume K, Batta K, et al. Transcriptional coactivator PC4, a chromatin-associated protein, induces chromatin condensation. Mol Cell Biol. 2006;26(22):8303-15.
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Microarray Service
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4
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2004
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Balasubramanyam K, Altaf M, Varier RA, et al. Polyisoprenylated benzophenone, garcinol, a natural histone acetyltransferase inhibitor, represses chromatin transcription and alters global gene expression. J Biol Chem. 2004;279(32):33716-26.
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Microarray Service
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3
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2003
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Pillai B, Verma J, Abraham A, et al. Whole genome expression profiles of yeast RNA polymerase II core subunit, Rpb4, in stress and nonstress conditions. J Biol Chem. 2003;278(5):3339-46.
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Microarray Service
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2
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2001
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Genome-wide expression profile of RNA polymerase II subunit mutant of yeast using microarray technology
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1
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1998
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Lvovsky L, Ioshikhes I, Raja MC, et al. Interdependence between DNA template secondary structure and priming efficiencies of short primers. Nucleic Acids Res. 1998;26(23):5525-32.
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Mol Bio
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