COMMANDER is a novel GUI based analysis interface that can bypass command line scripting, enabling NGS Data Analysis just at a click of a button. Beyond Excel feature and other tools that are integral to NGS analysis, Commander comes handy for bioinformatics and many other applications

Commander Early access version:

  • Base calling of Nanopore FAST5 files
  • Conversion of FASTQ to FASTA format
  • BCL2 to FASTQ demultiplexing
  • QC of NGS raw data
  • Trimming of the reads
  • Filtering the reads based on length, quality or sequence
  • Sequence Search
  • Customized analysis and reports 
  • Set up and run local blast
  • Beyond Excel

Suitable NGS platforms:

Illumina, Nanopore, ION, Pacbio

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License : A license from Genotypic Technology is required to use Commander. It can run only in the system in which it is installed. The license includes GT tools which are made by Genotypic and are installed well within commander as a package

License to 3rd party tools: The 3rd party base calling tools, trimmers and other like NCBI blast – the user should have valid licenses to use them. Commander writes the command for running the tools and does NOT provide a license to use them. Commander is a replacement for commandline scripting prompt and not replacement for any NGS software.

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